View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7405_low_25 (Length: 230)

Name: NF7405_low_25
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7405_low_25
NF7405_low_25
[»] chr6 (2 HSPs)
chr6 (73-220)||(34112734-34112881)
chr6 (73-220)||(12470314-12470462)
[»] chr3 (2 HSPs)
chr3 (73-220)||(34306471-34306618)
chr3 (70-113)||(8366222-8366265)
[»] chr7 (3 HSPs)
chr7 (72-147)||(33829827-33829902)
chr7 (70-147)||(37503380-37503456)
chr7 (73-115)||(24857354-24857396)
[»] chr4 (1 HSPs)
chr4 (73-113)||(25267846-25267886)
[»] chr2 (2 HSPs)
chr2 (73-115)||(8078499-8078541)
chr2 (73-130)||(21466414-21466471)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 34112734 - 34112881
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatccannnnnnnngcactatgaaccccctt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||    
T  34112734 cagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatccattttttttgcactatgaatcccctt 34112833  T
Q  173 agnnnnnnnnattgcataccctcaacttttatctgcactttcatctca 220  Q
    ||        ||||||||||||||||||||||||||||||||| ||||    
T  34112834 agttttttttattgcataccctcaacttttatctgcactttcaactca 34112881  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 12470314 - 12470462
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatcc-annnnnnnngcactatgaaccccct 171  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |        ||||||||||||||||    
T  12470314 cagtggcggagccacgtacaagtcaggggatgcacatgcatcctctcaacttttgaaaaatacaccaataatccaattttttttgcactatgaaccccct 12470413  T
Q  172 tagnnnnnnnnattgcataccctcaacttttatctgcactttcatctca 220  Q
    |||        |||||||||||||||| ||||| |||||||||| ||||    
T  12470414 tagttttttttattgcataccctcaacctttatttgcactttcaactca 12470462  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 34306618 - 34306471
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatccannnnnnnngcactatgaaccccctt 172  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||    
T  34306618 cagtggcggagccacgtacaagtcaggggatgcacatgcatcctctcaacttttgaaaaatacaccaataatccaatttttttgcactatgaaccccctt 34306519  T
Q  173 agnnnnnnnnattgcataccctcaacttttatctgcactttcatctca 220  Q
    ||        |||||||||||||||| ||||| | |||||||| ||||    
T  34306518 agttttttttattgcataccctcaacctttatttacactttcaactca 34306471  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 8366222 - 8366265
Alignment:
Q  70 aaccagtggcggagccacatacaagttaggggatgcacatgcat 113  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  8366222 aaccagtggcggagccacatacaagtgaggggatgcagatgcat 8366265  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 33829827 - 33829902
Alignment:
Q  72 ccagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatcca 147  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33829827 ccagtggcggagccacgtacaagtcaggggatgcacatgcatcctctcaacttttgaaaaatacaccaataatcca 33829902  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 37503380 - 37503456
Alignment:
Q  70 aaccagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaaaatacaccaataatcca 147  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||  |||||| |||||||||||||    
T  37503380 aaccagtggcggagccacctacaagtcaggggatgcacatgcatac-ctcaactttagaaaaatgcaccaataatcca 37503456  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 24857396 - 24857354
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcc 115  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  24857396 cagtggcggagccacatacaagtgaggggatgcagatgcatcc 24857354  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 25267846 - 25267886
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcat 113  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  25267846 cagtggcggagccacatacaagtgaggggatgcaaatgcat 25267886  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 8078541 - 8078499
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcc 115  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||    
T  8078541 cagtggcggtgccacatacaagtgaggggatgcagatgcatcc 8078499  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 21466414 - 21466471
Alignment:
Q  73 cagtggcggagccacatacaagttaggggatgcacatgcatcctctcaacttttaaaa 130  Q
    ||||||||| |||||||| |||| ||||||||||| ||||||| || | |||||||||    
T  21466414 cagtggcggtgccacatataagtgaggggatgcacttgcatcccctgatcttttaaaa 21466471  T

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