View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7405_low_3 (Length: 584)

Name: NF7405_low_3
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7405_low_3
NF7405_low_3
[»] chr3 (17 HSPs)
chr3 (1-570)||(4271876-4272446)
chr3 (225-328)||(25713426-25713529)
chr3 (223-330)||(24574904-24575011)
chr3 (234-331)||(33119622-33119719)
chr3 (254-330)||(6784086-6784162)
chr3 (236-315)||(24150832-24150911)
chr3 (234-315)||(19552148-19552229)
chr3 (234-315)||(26555817-26555898)
chr3 (234-315)||(35730935-35731016)
chr3 (234-315)||(36055007-36055088)
chr3 (234-315)||(38682429-38682510)
chr3 (258-314)||(34292505-34292561)
chr3 (222-306)||(45215410-45215494)
chr3 (234-318)||(50900444-50900528)
chr3 (234-275)||(43151162-43151203)
chr3 (242-274)||(28146300-28146332)
chr3 (254-318)||(30588862-30588926)
[»] chr7 (10 HSPs)
chr7 (224-330)||(31494232-31494338)
chr7 (234-330)||(47031248-47031344)
chr7 (229-324)||(24939640-24939735)
chr7 (255-330)||(36355468-36355543)
chr7 (247-331)||(32630714-32630798)
chr7 (235-331)||(48545802-48545899)
chr7 (242-309)||(32630649-32630716)
chr7 (234-315)||(151861-151942)
chr7 (234-315)||(27418642-27418723)
chr7 (235-315)||(30110807-30110887)
[»] chr2 (10 HSPs)
chr2 (234-330)||(27090638-27090734)
chr2 (225-331)||(2372963-2373069)
chr2 (222-331)||(30046113-30046222)
chr2 (222-331)||(30137157-30137266)
chr2 (225-331)||(24936122-24936228)
chr2 (225-331)||(25684806-25684912)
chr2 (242-306)||(2485652-2485716)
chr2 (225-308)||(18176476-18176559)
chr2 (227-315)||(29940941-29941029)
chr2 (234-330)||(38822919-38823016)
[»] chr5 (4 HSPs)
chr5 (227-331)||(7857021-7857125)
chr5 (257-314)||(9689337-9689394)
chr5 (234-274)||(6902692-6902732)
chr5 (234-315)||(40410593-40410674)
[»] chr1 (6 HSPs)
chr1 (225-330)||(9191125-9191230)
chr1 (234-308)||(51826843-51826917)
chr1 (234-315)||(26882826-26882907)
chr1 (225-306)||(27198265-27198346)
chr1 (234-315)||(45318463-45318544)
chr1 (227-315)||(52705389-52705477)
[»] chr8 (13 HSPs)
chr8 (247-327)||(14723940-14724020)
chr8 (146-227)||(12185574-12185655)
chr8 (146-227)||(12430002-12430083)
chr8 (227-328)||(24296639-24296740)
chr8 (146-227)||(12174065-12174143)
chr8 (146-227)||(12418493-12418571)
chr8 (226-315)||(2112786-2112875)
chr8 (234-315)||(42274975-42275056)
chr8 (242-328)||(38806866-38806952)
chr8 (234-315)||(1606013-1606094)
chr8 (234-315)||(29260276-29260357)
chr8 (235-315)||(43605364-43605444)
chr8 (259-331)||(23185725-23185797)
[»] chr6 (1 HSPs)
chr6 (225-331)||(35164798-35164904)
[»] chr4 (3 HSPs)
chr4 (247-330)||(5116977-5117060)
chr4 (234-315)||(8584005-8584086)
chr4 (234-306)||(28847111-28847183)
[»] scaffold0016 (1 HSPs)
scaffold0016 (234-315)||(81782-81863)


Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 4271876 - 4272446
Alignment:
Q  1 attcatggaattggttcctccaagtatagnnnnnnnaactcgtaccattattgtacttaatcgagattcagaaaaagagacaatgggattaagctgaatc 100  Q
    |||||||||||||||||||||||||||||       |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4271876 attcatggaattggttcctccaagtatagtttttttaactcgtaccattgctgtacttaatcgagattcaaaaaaagagacaatgggattaagctgaatc 4271975  T
Q  101 tggattggatttgggtttaagctgaataattttctattgcaacttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaat 200  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271976 tggattggatttgggtttaagctgaatagttttctattgcagcttaacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaat 4272075  T
Q  201 ctggaa-gcagcagaagcaaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtatt 299  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4272076 ctggaaagcagtagaagcaaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtatt 4272175  T
Q  300 caatcaagatctttaaagattagaaataatttatgcggtcttactcttcacaagggtgattccccttggactactttggccctgaagtcgaatcttcgca 399  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  4272176 caatcaagatttttaaagattagaaataattcatgcggtcttactcttcgcaagggtgattccccttggactactttggccctgaagtcaaatctccgca 4272275  T
Q  400 aattgtgaccaaatcctcagaactgggatgtcacgcctctagggaagggttttttcgagttccattttaacacagttgatgatatgagacgggtgtaggc 499  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |||    
T  4272276 aattgtggccaaatcttcagaactgggatgtcacacctctagggaagggttttttcgagttccattttaacacggttgatgatatgagatgggtttgggc 4272375  T
Q  500 tatgggggttgtgcatctcaaccccggcttacttagattcttttgctggtcttgtgatttcactccacagg 570  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4272376 tatgggggctgtgcatctcaaccccgacttacttagattcttttgctggtcttgtgatttcactccacagg 4272446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 25713529 - 25713426
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    |||||||| ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||| |||||||| || |||||||||||    
T  25713529 ttaggagggtgtattgaattgggatttcgaaggattttaaaagagtttttagttatagaaaaatcttgaggtattccatcaagattttaaaagattagaa 25713430  T
Q  325 ataa 328  Q
    ||||    
T  25713429 ataa 25713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 24575011 - 24574904
Alignment:
Q  223 acttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattag 322  Q
    ||||||| || || |||| |||||||||| |||| ||||||||||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||    
T  24575011 acttagggggatgaattgaattgggattttgaagaattttaaaagactttttagttataaaaaaatcttgagatattcaatcaagattttaaaagattag 24574912  T
Q  323 aaataatt 330  Q
    ||||||||    
T  24574911 aaataatt 24574904  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 33119719 - 33119622
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 331  Q
    ||||||| |||||||| | ||||||||||||||||| |||| || ||| |||||| | || ||||||||||||||| || ||||||||||||||||||    
T  33119719 tgtattgaattgggatattgaaggattttaaaagatattttagttataaaaaaatttcgaggtattcaatcaagattttaaaagattagaaataattt 33119622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 6784162 - 6784086
Alignment:
Q  254 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    |||||||||| |||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||||||||||    
T  6784162 aaggattttataagactttttagttatacaaaaatcttgagatattcaatcaagattttaaaagattagaaataatt 6784086  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 24150911 - 24150832
Alignment:
Q  236 tattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||| |||||  ||||||||||||||||||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  24150911 tattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatcaagatttttaa 24150832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 19552229 - 19552148
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  |||||||||||||||||||||  |  || |||| |||||  ||||||||||||||| |||||    
T  19552229 tgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatcaagatttttaa 19552148  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 26555817 - 26555898
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  26555817 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 26555898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 35730935 - 35731016
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||   |||||||||||||| |||||    
T  35730935 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 35731016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 36055088 - 36055007
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  36055088 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 36055007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 38682429 - 38682510
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    ||||||| |||| |||||  ||||||||||||||| ||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  38682429 tgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatcaagatttttaa 38682510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 34292561 - 34292505
Alignment:
Q  258 attttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 314  Q
    |||||||||||||||||   |||| |||||||||| |||||||||||||||| ||||    
T  34292561 attttaaaagattttttaaaaataaaaaaatcttgtagtattcaatcaagattttta 34292505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 45215494 - 45215410
Alignment:
Q  222 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 306  Q
    ||||||||||| ||||||  |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||    
T  45215494 gacttaggagggtgtattaaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaa 45215410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 50900528 - 50900444
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 318  Q
    |||||||||||  |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  50900528 tgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 50900444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 43151162 - 43151203
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttg 275  Q
    ||||||| |||||||||| |||||||||||||||| ||||||    
T  43151162 tgtattgaattgggattttgaaggattttaaaagactttttg 43151203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 28146332 - 28146300
Alignment:
Q  242 attgggatttggaaggattttaaaagatttttt 274  Q
    ||||||||||||||||||||||||||| |||||    
T  28146332 attgggatttggaaggattttaaaagacttttt 28146300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 30588862 - 30588926
Alignment:
Q  254 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 318  Q
    ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  30588862 aaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 30588926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 31494232 - 31494338
Alignment:
Q  224 cttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattaga 323  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||||||    
T  31494232 cttaggagggtgtattggattgggatttggaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattaga 31494331  T
Q  324 aataatt 330  Q
    |||||||    
T  31494332 aataatt 31494338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 47031248 - 47031344
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    ||||||| |||||||||| |||||||||||||| | |||||||| |||||||||||||||  |||||||||||||| || ||| |||| ||||||||    
T  47031248 tgtattgaattgggattttgaaggattttaaaaaactttttggttatagaaaaatcttgagatattcaatcaagattttaaaaaattataaataatt 47031344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 24939735 - 24939640
Alignment:
Q  229 gaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    |||| ||||||| ||||||| || ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||||||    
T  24939735 gagggtgtattgcattgggagttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattagaa 24939640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 36355543 - 36355468
Alignment:
Q  255 aggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    ||||||||||| ||||||||||| ||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  36355543 aggattttaaatgattttttggttataaaaaaatcgtgaggtattcaatcaagattttaaaagattagaaataatt 36355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 32630714 - 32630798
Alignment:
Q  247 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 331  Q
    ||||| ||||||||||||| || |||||| | ||| ||||||||||| ||||||||||||| | || ||||||||||||||||||    
T  32630714 gattttgaaggattttaaatgactttttgcttataaaaaaatcttgaggtattcaatcaagcttttaaaagattagaaataattt 32630798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 48545899 - 48545802
Alignment:
Q  235 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaa-tcttgaagtattcaatcaagatctttaaagattagaaataattt 331  Q
    |||||| |||| ||||| ||| |||||||||||||||||| ||  || ||||| |||||| ||||||||||||||| || || |||||||||||||||    
T  48545899 gtattgaattgagattttgaaagattttaaaagattttttagttctaaaaaaaatcttgaggtattcaatcaagattttaaaggattagaaataattt 48545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 32630649 - 32630716
Alignment:
Q  242 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagat 309  Q
    |||| ||||| ||||||||||||| ||  ||||||| ||| ||||||||||| |||||||||||||||    
T  32630649 attgagattttgaaggattttaaatgacgttttggttataaaaaaatcttgaggtattcaatcaagat 32630716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 151861 - 151942
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  151861 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 151942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 27418723 - 27418642
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||| ||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  27418723 tgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 27418642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 30110807 - 30110887
Alignment:
Q  235 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    ||||||||||| |||||  ||| ||||||||||| ||||| ||  || |||| ||||| |||||||||| ||||| |||||    
T  30110807 gtattggattgagatttcaaagaattttaaaagacttttttgttttataaaagtcttgtagtattcaattaagatttttaa 30110887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 27090638 - 27090734
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    ||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27090638 tgtattggattgggatttccaaagattttaaaagattttttggttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaataatt 27090734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 2372963 - 2373069
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    |||||| | ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||| || |||||||||||    
T  2372963 ttaggatggtgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaa 2373062  T
Q  325 ataattt 331  Q
    |||||||    
T  2373063 ataattt 2373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 30046113 - 30046222
Alignment:
Q  222 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 321  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30046113 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30046212  T
Q  322 gaaataattt 331  Q
    ||||||||||    
T  30046213 gaaataattt 30046222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 30137157 - 30137266
Alignment:
Q  222 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 321  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30137157 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30137256  T
Q  322 gaaataattt 331  Q
    ||||||||||    
T  30137257 gaaataattt 30137266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 24936228 - 24936122
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  24936228 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 24936129  T
Q  325 ataattt 331  Q
    |||||||    
T  24936128 ataattt 24936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 25684912 - 25684806
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  25684912 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 25684813  T
Q  325 ataattt 331  Q
    |||||||    
T  25684812 ataattt 25684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 2485716 - 2485652
Alignment:
Q  242 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 306  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||||  |||||||||||    
T  2485716 attgggatttcgaagaattttaaaagattttttggttatagaaaaatcttgagatattcaatcaa 2485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 18176559 - 18176476
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 308  Q
    |||||||| ||||||| |||  |||||| | |||||||||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  18176559 ttaggagggtgtattgaattaagatttgaagggattttaaaagattttttaataataaaaaaatcttgtggtattcaatcaaga 18176476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 29940941 - 29941029
Alignment:
Q  227 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29940941 aggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 38823016 - 38822919
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttt-tggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    ||||||| ||||  |||| |||||||| ||||||| |||| | || ||| |||||||| || | ||||||||||||| || |||||||||||||||||    
T  38823016 tgtattgaattgaaattttgaaggattgtaaaagacttttatagttataaaaaaatctcgaggcattcaatcaagattttaaaagattagaaataatt 38822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 7857021 - 7857125
Alignment:
Q  227 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 326  Q
    |||||| |||||| ||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||    
T  7857021 aggagggtgtattagattgagatttagaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaat 7857120  T
Q  327 aattt 331  Q
    |||||    
T  7857121 aattt 7857125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 9689394 - 9689337
Alignment:
Q  257 gattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 314  Q
    ||||||||||||||||||  | ||| ||||||||||| ||||||||||||||| ||||    
T  9689394 gattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaagattttta 9689337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 6902732 - 6902692
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagatttttt 274  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  6902732 tgtattggattgagatttggaaggattttaaaagacttttt 6902692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 40410593 - 40410674
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  | ||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  40410593 tgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 40410674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 9191125 - 9191230
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    |||||||| |||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||||  |||||||||||||| || |||||||||||    
T  9191125 ttaggagggtgtattggattgagatttggaaaaattttaaaagactttttggttatagaaaaatcttgagttattcaatcaagattttaaaagattagaa 9191224  T
Q  325 ataatt 330  Q
    ||||||    
T  9191225 ataatt 9191230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 51826917 - 51826843
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 308  Q
    ||||||| |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||||    
T  51826917 tgtattgaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaga 51826843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 26882907 - 26882826
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  26882907 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatcaagatttttaa 26882826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 27198265 - 27198346
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 306  Q
    |||||||| |||||||||||| || ||  | ||||||||||||| |||||| | ||| |||| |||||  ||||||||||||    
T  27198265 ttaggagggtgtattggattgagactttaagggattttaaaagactttttgtttataaaaaagtcttgtggtattcaatcaa 27198346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 45318463 - 45318544
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| ||||   ||||||||||||||| |||||    
T  45318463 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatcaagatttttaa 45318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 52705389 - 52705477
Alignment:
Q  227 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||| ||||||  |||| |||||  || |||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  52705389 aggagggtgtattcaattgagatttcaaaagattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 52705477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 14724020 - 14723940
Alignment:
Q  247 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaata 327  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14724020 gatttggaaggattttaaaagacttttttgttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaata 14723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 12185655 - 12185574
Alignment:
Q  146 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 227  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12185655 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 12430083 - 12430002
Alignment:
Q  146 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 227  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  12430083 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaatctggaaacagcagaaacagaagactta 12430002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 24296740 - 24296639
Alignment:
Q  227 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 326  Q
    |||||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||| ||||    
T  24296740 aggagggtgtattgaattgggatttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattataaat 24296641  T
Q  327 aa 328  Q
    ||    
T  24296640 aa 24296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 12174143 - 12174065
Alignment:
Q  146 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 227  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12174143 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12174065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 12418571 - 12418493
Alignment:
Q  146 aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaagcagcagaagcaaaagactta 227  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  12418571 aacagttccaccagcaatgaattttcagcaaagtgtctatggaactc---ccaatctggaagcagtagaaacaaaagactta 12418493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 2112786 - 2112875
Alignment:
Q  226 taggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    ||||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  2112786 taggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 2112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 42274975 - 42275056
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  42274975 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 42275056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 38806952 - 38806866
Alignment:
Q  242 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 328  Q
    |||||||||| ||  ||||||| |||| ||||  || ||| ||||||||||| ||||||||||||||| || | |||||||||||||    
T  38806952 attgggattttgatagattttagaagacttttaagttataaaaaaatcttgaggtattcaatcaagattttaacagattagaaataa 38806866  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 1606094 - 1606013
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  1606094 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 1606013  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 29260357 - 29260276
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29260357 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29260276  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 43605444 - 43605364
Alignment:
Q  235 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  43605444 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 43605364  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 23185725 - 23185797
Alignment:
Q  259 ttttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 331  Q
    |||||||||| |||||  | ||| |||||||| || ||||||||||||||| || | | ||||||||||||||    
T  23185725 ttttaaaagactttttacttataaaaaaatctcgaggtattcaatcaagattttaatatattagaaataattt 23185797  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 35164798 - 35164904
Alignment:
Q  225 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 324  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  35164798 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 35164897  T
Q  325 ataattt 331  Q
    |||||||    
T  35164898 ataattt 35164904  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 5116977 - 5117060
Alignment:
Q  247 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 330  Q
    ||||||||| ||||||||||||  ||||  | ||| ||||||||| | ||||||||||||||| || | |||||||||||||||    
T  5116977 gatttggaaagattttaaaagaccttttaattataaaaaaatcttaaggtattcaatcaagattttaagagattagaaataatt 5117060  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 8584086 - 8584005
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| |||||  |  || |||| |||||  ||||||||||||||| |||||    
T  8584086 tgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagatttttaa 8584005  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 28847183 - 28847111
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 306  Q
    |||||||||||| |||||  ||||||||||||||| |||||  ||||| |||| ||| |  ||||||||||||    
T  28847183 tgtattggattgagattttaaaggattttaaaagacttttttataataaaaaagtctagtggtattcaatcaa 28847111  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 81863 - 81782
Alignment:
Q  234 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 315  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  81863 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 81782  T

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