View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_low_6 (Length: 542)
Name: NF7405_low_6
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 28118472 - 28118995
Alignment:
| Q |
1 |
atgtttacatatgttgatacccataattagcaatagcataggctaccaatcattcaaccatttaatgcttgatccacacaattggttcttccccatgcca |
100 |
Q |
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| T |
28118472 |
atgtttacatatgttgatacccataattagcaatagcataggctaccaatcattcaaccatttaatgcttgatccacacaattggttcttccccatgcca |
28118571 |
T |
|
| Q |
101 |
ccattatataaaccttatcactttccatccaagtactcatcactacacttctctctccctctcattacatcttatactctaggcactatgaagtcaagat |
200 |
Q |
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| T |
28118572 |
ccattatataaaccttatcactttccatccaagtactcatcactacacttctctctccctctcattacatcctatactctaggcactatgaagtcaagat |
28118671 |
T |
|
| Q |
201 |
ttttgaaaggatgtgttaacaaatgcaagaaaatgggaagcatagtaaaaacttgtgctacttgtgaagattgttgtgaaagaggtttatggtcttctct |
300 |
Q |
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| T |
28118672 |
ttttgaaaggatgtgttaacaaatgcaagaaaatgggaagtatagtaaaaacttgtgctacttgtgaagattgttgtgaaagaggtttatggtcttctct |
28118771 |
T |
|
| Q |
301 |
gcatgaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgctt |
400 |
Q |
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| T |
28118772 |
gcatgaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgctt |
28118871 |
T |
|
| Q |
401 |
catcatccactcttcaaagccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtgatgaacatcttttcc |
500 |
Q |
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| T |
28118872 |
catcatccactcttcaaagccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcc |
28118971 |
T |
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| Q |
501 |
taagtgtcctacgatgtgctagtt |
524 |
Q |
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| T |
28118972 |
taagtgtcctacgatgtgctagtt |
28118995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 320 - 507
Target Start/End: Complemental strand, 41011078 - 41010891
Alignment:
| Q |
320 |
ccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatcatccactcttcaaag |
419 |
Q |
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|||| |||||| ||||| |||||| ||||||| |||||||| ||||| | || |||| ||| ||||| |||| ||| || ||||||||||| ||||| | |
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| T |
41011078 |
ccaaatgatgttccaaagggtcacttggttgtgtatgtaggtgagaactataagagatttgtcatcaagattggattactccatcatccacttttcaagg |
41010979 |
T |
|
| Q |
420 |
ccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtgatgaacatcttttcctaagtgt |
507 |
Q |
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| T |
41010978 |
ccttgttggaacaagctcgagaagaatatgatttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgt |
41010891 |
T |
|
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