View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_low_9 (Length: 437)
Name: NF7405_low_9
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 126 - 377
Target Start/End: Complemental strand, 6285301 - 6285050
Alignment:
| Q |
126 |
tttataaaaaatgatccacacactttaaaaatagactatgacttaaagctgcgccggttccttatgatgaatggttggtcgattgaacccacgcccctcc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
6285301 |
tttataaaaaatgatccacacactttaaaaatagactatgacttaaagctgcgccggttcctcatgatgaatggttggttgattgaacccacgcccctcc |
6285202 |
T |
|
| Q |
226 |
aannnnnnnnatagttttgggatcgaacatgtgagaaaagatcacgagtatgtgaagcacgaacacaaacaatgtcctacataaaatggacaccaataat |
325 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
6285201 |
aattttttttatagttttgggatcgaacctgtgagaaaagatcacgagtatgtgaagcaagaacacaaacaatgtcgtacataaaatggacaccaataat |
6285102 |
T |
|
| Q |
326 |
aatttgagaaaacgatataattcagtatgattaaaggtgtcactgtggtgtt |
377 |
Q |
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||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
6285101 |
aatttgagaaaacaatataattcaatatgattataggtgtcactgtggtgtt |
6285050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 6285615 - 6285497
Alignment:
| Q |
6 |
agtgataagaatttgatattataattttaagaaacatagtttaaattctaagataacaattgtaaaatggtcattaatattactttaaataatgataatt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285615 |
agtgataagaatttgatattataattttaagaaacatagtttaaattctaagataacaattgtaaaatggtcattaatattactttaaataatgataatt |
6285516 |
T |
|
| Q |
106 |
tcactcttccataatattt |
124 |
Q |
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| T |
6285515 |
tcactcttccataatattt |
6285497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 420
Target Start/End: Complemental strand, 6284662 - 6284627
Alignment:
| Q |
385 |
gaatataatttttagagaaaaatgttagaactaaat |
420 |
Q |
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| T |
6284662 |
gaatataatttttagagaaaaatgttagaactaaat |
6284627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 36386267 - 36386219
Alignment:
| Q |
317 |
accaataataatttgagaaaacgatataattcagtatgattaaaggtgt |
365 |
Q |
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||||||||||||||||||||| || |||||||||| | ||||||||||| |
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| T |
36386267 |
accaataataatttgagaaaaggacataattcagtgtaattaaaggtgt |
36386219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 50848361 - 50848325
Alignment:
| Q |
315 |
acaccaataataatttgagaaaacgatataattcagt |
351 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||| |
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| T |
50848361 |
acaccaataataatttgaaaaaatgatataattcagt |
50848325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 23128720 - 23128683
Alignment:
| Q |
314 |
gacaccaataataatttgagaaaacgatataattcagt |
351 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
23128720 |
gacaccaataataatttgagaaaaccatataattcagt |
23128683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 21141041 - 21140989
Alignment:
| Q |
314 |
gacaccaataataatttgagaaaacgatataattcagtatgattaaaggtgtc |
366 |
Q |
| |
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||||||| ||||||||| |||||| |||||||||||| |||||| ||||||| |
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| T |
21141041 |
gacaccactaataatttaagaaaatcatataattcagtgtgattataggtgtc |
21140989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 1893426 - 1893393
Alignment:
| Q |
316 |
caccaataataatttgagaaaacgatataattca |
349 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
1893426 |
caccaataataatttgagaaaatgatataattca |
1893393 |
T |
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