View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_high_12 (Length: 472)
Name: NF7406_high_12
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 36732642 - 36732435
Alignment:
| Q |
16 |
cacacgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaa |
115 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
36732642 |
cacacaatttccattctctttaaatgccctattacaattgagtttaacccatccttcatgagaacgcttccaaccaatgaaagttgttttagtatgtcaa |
36732543 |
T |
|
| Q |
116 |
ggaccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaat |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36732542 |
ggatcattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagtcggattagcagatctttaaaaattattctcaaaat |
36732443 |
T |
|
| Q |
216 |
ttgtttta |
223 |
Q |
| |
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|||||||| |
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|
| T |
36732442 |
ttgtttta |
36732435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 273 - 454
Target Start/End: Complemental strand, 36731005 - 36730822
Alignment:
| Q |
273 |
atctcacgaaaacttctggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaatacc |
372 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36731005 |
atctcacgaaaacttcaggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaacacc |
36730906 |
T |
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| Q |
373 |
ttt--nnnnnnnnnnnngaataatggaaactaatgccaaaaaattatagcataaaccaaactccaaacacataaaccataacaa |
454 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36730905 |
tttaaaaaaaaaaaaaagaataatggaaacttatgccaaaaaattatagcataaaccaaactccaaatacataaaccataacaa |
36730822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 36731655 - 36731609
Alignment:
| Q |
221 |
ttaagtatgctgagctagacgtggagatataacttaagtacttaaat |
267 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
36731655 |
ttaagtatgatgagctagacgtagagatataacttaagtacttaaat |
36731609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 41550373 - 41550578
Alignment:
| Q |
18 |
cacgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaagg |
117 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||| || || | | ||||||||||||||||| |||||| |||||| | ||| |
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| T |
41550373 |
cacgatttccattctctttgcatgccccatcacaattgagtttaacccatccctcctgaggatgcttccaaccaatgaaaattgtttcagtgtgccgagg |
41550472 |
T |
|
| Q |
118 |
accattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaattt |
217 |
Q |
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||| | | |||||| ||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| | ||||| |||||||| ||||||| || |
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| T |
41550473 |
accttgaagaagattattggtgcaatcttcgatagtgctagagaaggcctgaatgacactagttggattagctggtctttgaaaattatcctcaaaaatt |
41550572 |
T |
|
| Q |
218 |
gtttta |
223 |
Q |
| |
|
|||||| |
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|
| T |
41550573 |
gtttta |
41550578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 37752415 - 37752240
Alignment:
| Q |
16 |
cacacgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaa |
115 |
Q |
| |
|
||||||||||||||||| ||| | | || |||| |||||||||||||| |||| ||||| | || |||||||||||||||| |||| ||||||| | |
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| T |
37752415 |
cacacgatttccattctatttgcacgtcccatcataattgagtttaacc-atccctcatgaggacacttccaaccaatgaaaaccgtttcagtgtgttga |
37752317 |
T |
|
| Q |
116 |
ggaccattatgaaga---taattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagc |
189 |
Q |
| |
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|||||||| |||||| | ||||||||| |||||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
37752316 |
ggaccattctgaagaagattattggtgcaatcttcgatagtgctagagaacatttgaatgacactagttggattagc |
37752240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 30901754 - 30901679
Alignment:
| Q |
21 |
gatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaa |
96 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||| ||||| ||||| | | |||||| ||||||||| |
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|
| T |
30901754 |
gatttccattctctttgcatgccccatcacaatttagtttaactcatccctcatgaggatgcttccgaccaatgaa |
30901679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 29515391 - 29515562
Alignment:
| Q |
16 |
cacacgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaa |
115 |
Q |
| |
|
|||| |||||||||||||||| | |||| ||||||||||||||||| |||||| || || | | ||||||| ||| ||||| ||| || || |||| | |
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| T |
29515391 |
cacatgatttccattctctttgcacgccc-atcacaattgagtttaatccatccttcctgaggatgcttccagccagtgaaaattggttcagcatgtcga |
29515489 |
T |
|
| Q |
116 |
ggaccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagc |
189 |
Q |
| |
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||||| | | ||||| ||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
29515490 |
ggacc-tgaagaagagtattggtgtagtcttcgaaagttctagagaaggcttggatgacactagttggattagc |
29515562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 6261037 - 6260936
Alignment:
| Q |
25 |
tccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggaccatta |
124 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| ||||| ||||| | ||||||||||||||| ||| |||||| | |||||| | ||||| || |
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| T |
6261037 |
tccattctctttgcacgccccatcacaattgagtttaatccatctctcatgaggacgcttccaaccaataaaaattgtttcaatgtgtcgatgaccaata |
6260938 |
T |
|
| Q |
125 |
tg |
126 |
Q |
| |
|
|| |
|
|
| T |
6260937 |
tg |
6260936 |
T |
|
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