View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_high_13 (Length: 466)
Name: NF7406_high_13
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 9619549 - 9619769
Alignment:
| Q |
19 |
caaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagcttttacctttcatacatttgaatttca |
118 |
Q |
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| T |
9619549 |
caaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagcttttacctttcatacatttgaatttca |
9619648 |
T |
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| Q |
119 |
tgtgacttcaagaatacttgctaatcattcagcgtcgttgtttaagatcttttggctcttgaatggctactacgacataatcgaactgccttgtaagtgt |
218 |
Q |
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| T |
9619649 |
tgtgactccaagaatacttgctaatcattcagcgtcgttgtttaagatcttttggctcttgaatggctactacggcataatcgaactgccttgtaagtgt |
9619748 |
T |
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| Q |
219 |
gtgcgcaattttttccctgac |
239 |
Q |
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| T |
9619749 |
gcgcgcaattttttccctgac |
9619769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 280 - 413
Target Start/End: Original strand, 9619766 - 9619899
Alignment:
| Q |
280 |
tgaccaacttatcaattttgnnnnnnntaaatccttttcatgaaattagcagctcaaactgtcggttaaattggatccattcctccttgttttgagcata |
379 |
Q |
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| T |
9619766 |
tgaccaacttatcaattttgaaaaaaataaatcattttcatgaaattagcagctcaaactgtcggttaaattggatccattcctcgttgttttgagcata |
9619865 |
T |
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| Q |
380 |
atttcccatgctttcttagctgttgtagtatgaa |
413 |
Q |
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| T |
9619866 |
atttcccatgcttccttagctgttgtagtatgaa |
9619899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 1347251 - 1347197
Alignment:
| Q |
39 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
93 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
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| T |
1347251 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
1347197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8675805 - 8675854
Alignment:
| Q |
43 |
ggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagct |
92 |
Q |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagct |
8675854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 19653307 - 19653263
Alignment:
| Q |
30 |
cctctttggttgcggtctaccctcctttgcacaaatcacttattt |
74 |
Q |
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| T |
19653307 |
cctctttggttgcggtctacattccgttgcacaaatcactcattt |
19653263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 32241244 - 32241181
Alignment:
| Q |
20 |
aaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcagattt |
83 |
Q |
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|||||| ||||||||||||||| |||||||| ||||||||||||||| || || |||||||||| |
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| T |
32241244 |
aaagttttgccctctttggttgaggtctaccatcctttgcacaaatccctcatctgtcagattt |
32241181 |
T |
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