View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_high_22 (Length: 329)

Name: NF7406_high_22
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_high_22
NF7406_high_22
[»] chr7 (1 HSPs)
chr7 (20-312)||(43059978-43060273)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 43059978 - 43060273
Alignment:
Q  20 taatgaacggtgcagctgttttcctctgttttgtatcaatatggatttttgtttcctgaaaatattgagatgttctttagannnnnnnattttattgcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||    
T  43059978 taatgaacggtgcagctgttttcctctgttttgtatcaatatggatttttgtttcctgacaatattgagatgttctttagattttttt-ttttattgcag 43060076  T
Q  120 aggtgtttttgttgagcaggctggaagtaatgtggcattatttttgcatcttttacaagttttaggatttttgtttaatttgttgcaaatgcatccttat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43060077 aggtgtttttgttgagcaggctggaagtaatgtggcattatttttgcatcttttacaagttttaggatttttgtttaatttgttgcaaatgcatccttat 43060176  T
Q  220 tgtgaagtgtgctctttttgtttat----gatatttcttctgctgacaatgtgattaatttattggcgtttggcaagctcaaattcatgtgtgatgt 312  Q
    |||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  43060177 tgtgcagtgtgctctttttgtttatataagatatttcttctgctgacaatgtgattaatttattggcgtttggcaagctcaaattaatttgtgatgt 43060273  T

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