View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_high_26 (Length: 267)

Name: NF7406_high_26
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_high_26
NF7406_high_26
[»] chr3 (3 HSPs)
chr3 (14-250)||(25357491-25357727)
chr3 (14-226)||(25352841-25353053)
chr3 (24-240)||(25362179-25362395)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 25357727 - 25357491
Alignment:
Q  14 gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25357727 gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt 25357628  T
Q  114 aagggcgctgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaa 213  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  25357627 aaggacgttgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaggaatgttagagctgtttgttggttcaaccaaa 25357528  T
Q  214 aatgtgcatacaatgtttttgcgagtacagcgaaaaa 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  25357527 aatgtgcatacaatgtttttgcaagtacagcgaaaaa 25357491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 25353053 - 25352841
Alignment:
Q  14 gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt 113  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  25353053 gaagggtaagccaaaatatgataagttcaatgcaggagctgaaatcaccaaagacttcaaattcagtattggaatggagtttacttctcgacaccagttt 25352954  T
Q  114 aagggcgctgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaa 213  Q
    |||| || ||||||||||| | ||||||||||||||||||||||||||||| ||| || ||  |||| ||  |||| |||||| |||  |||||||||||    
T  25352953 aaggacgttgttcgagagcacgatgtattaaatggcagaaaaataaaatttgccaagattgagaaaaggagggttaaagctgtttgtaagttcaaccaaa 25352854  T
Q  214 aatgtgcatacaa 226  Q
    |||||| ||||||    
T  25352853 aatgtggatacaa 25352841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 25362395 - 25362179
Alignment:
Q  24 ccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaatttaagggcgctg 123  Q
    |||||||||||||||||| ||  |||| | ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | ||||||||  | ||    
T  25362395 ccaaaatatgataagttcaatgtagaaacagaaatcaccaaagactttaaattcagtatcggaatggagttttcttctctacaactatttaaggatgttg 25362296  T
Q  124 ttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaaaatgtgcata 223  Q
    ||| ||||| |||||| ||||||  |||| | ||||||||||||  ||| | ||||  ||| ||||||||||| |||  ||| ||| ||||||||| |||    
T  25362295 ttcaagagcacaatgtgttaaataacagagagataaaatttaccgagaacgacaaatggaaggttagagctgtttgtaagtttaacaaaaaatgtggata 25362196  T
Q  224 caatgtttttgcgagta 240  Q
    || | |||||| |||||    
T  25362195 cactatttttgtgagta 25362179  T

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