View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7406_high_31 (Length: 233)
Name: NF7406_high_31
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 35673149 - 35673263
Alignment:
| Q |
106 |
ctctcaacttccaccgctgctgatgcactctcccgcctcctccaccgtctcccacccaacctctctcttcccaccatccgccgatcctctccaaccacca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35673149 |
ctctcaacttccaccgctgctgatgcactctcccgcctcctccaccgtctcccacccaacctctctcttcccaccatccgccgatcctctccaaccacca |
35673248 |
T |
|
| Q |
206 |
cctctccttcttctc |
220 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
35673249 |
cctctcctccttctc |
35673263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 35673075 - 35673104
Alignment:
| Q |
20 |
aaaaccttcatggtggaggctccacctcag |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35673075 |
aaaaccttcatggtggaggctccacctcag |
35673104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University