View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_high_33 (Length: 215)

Name: NF7406_high_33
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_high_33
NF7406_high_33
[»] chr2 (3 HSPs)
chr2 (19-202)||(3220250-3220431)
chr2 (61-202)||(12504720-12504861)
chr2 (61-202)||(14681065-14681206)
[»] scaffold0014 (2 HSPs)
scaffold0014 (61-202)||(143719-143860)
scaffold0014 (61-202)||(173513-173654)
[»] chr3 (3 HSPs)
chr3 (61-202)||(55488644-55488785)
chr3 (61-202)||(38327839-38327980)
chr3 (61-202)||(46073352-46073491)
[»] chr7 (4 HSPs)
chr7 (61-201)||(48728023-48728163)
chr7 (61-202)||(48513580-48513721)
chr7 (61-202)||(3718374-3718514)
chr7 (94-202)||(42105178-42105286)
[»] chr1 (3 HSPs)
chr1 (66-202)||(52887707-52887843)
chr1 (61-202)||(52609158-52609299)
chr1 (66-201)||(29886958-29887093)
[»] chr8 (3 HSPs)
chr8 (61-202)||(44197897-44198038)
chr8 (66-202)||(20793444-20793580)
chr8 (61-202)||(23929113-23929254)
[»] chr6 (1 HSPs)
chr6 (61-202)||(29651774-29651915)
[»] chr5 (4 HSPs)
chr5 (61-202)||(36662526-36662667)
chr5 (61-202)||(36679111-36679252)
chr5 (61-199)||(23203962-23204100)
chr5 (112-202)||(43560199-43560288)
[»] scaffold1284 (1 HSPs)
scaffold1284 (112-202)||(143-232)
[»] scaffold0318 (1 HSPs)
scaffold0318 (61-199)||(19955-20093)
[»] chr4 (1 HSPs)
chr4 (106-200)||(56288686-56288780)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 3220250 - 3220431
Alignment:
Q  19 attgccagctcagtcagtcacagtattgacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220250 attgccagctcagtcagtcacagtattgacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgga 3220347  T
Q  119 agcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220348 agcaacaagtcgaaggtgttcttcgcgaaacaaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 3220431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 12504720 - 12504861
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  12504720 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 12504819  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  12504820 aatttgtgatttcacctgatattccaccggtttttctcacag 12504861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 14681206 - 14681065
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  14681206 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 14681107  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  14681106 aatttgtgatttcacctgatattccaccggtttttctcacag 14681065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 143719 - 143860
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  143719 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 143818  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  143819 aatttgtgatttcacctgagattccatcggtttatctcacag 143860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 173513 - 173654
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  173513 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 173612  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  173613 aatttgtgatttcacctgatattccaccggtttttctcacag 173654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 55488644 - 55488785
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  55488644 aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 55488743  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  55488744 aatttgtgatttcacctgagattccaccggtttatctcacag 55488785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 38327980 - 38327839
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  38327980 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 38327881  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  38327880 aatttgtgatttcacctgatattccaccggtttttctcacag 38327839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 46073352 - 46073491
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||    
T  46073352 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga 46073451  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| ||||||||  ||||||||||||||    
T  46073452 aatttgtgatttcacctgagattcca--ggtttatctcacag 46073491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 48728163 - 48728023
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||    
T  48728163 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48728064  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcaca 201  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  48728063 aatttgtgatttcacctgagattccaccggtttatctcaca 48728023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 48513721 - 48513580
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  48513721 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48513622  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  48513621 aatttgtgatttcacctgatattccaccggtttttctcacag 48513580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 3718514 - 3718374
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| | |||||| ||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||| |||||| | |||||    
T  3718514 aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttc-tcgcggaacgaagatggtga 3718416  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3718415 aatttgtgatttcacctgagattccaccggtttatctcacag 3718374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 42105178 - 42105286
Alignment:
Q  94 gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggttt 193  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  42105178 gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggttt 42105277  T
Q  194 atctcacag 202  Q
    |||||||||    
T  42105278 atctcacag 42105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 52887707 - 52887843
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||    
T  52887707 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt 52887806  T
Q  166 gtgatttcacctcagattccaccggtttatctcacag 202  Q
    |||||||||||| ||||||||||||||||||||||||    
T  52887807 gtgatttcacctgagattccaccggtttatctcacag 52887843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 52609299 - 52609158
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  52609299 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 52609200  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  52609199 aatttgtgatttcacctgatattccaccggtttttctcacag 52609158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 29886958 - 29887093
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  29886958 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 29887057  T
Q  166 gtgatttcacctcagattccaccggtttatctcaca 201  Q
    |||||||| ||| |||||||||||||||||||||||    
T  29887058 gtgatttcgcctgagattccaccggtttatctcaca 29887093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 44197897 - 44198038
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  44197897 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 44197996  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  44197997 aatttgtgatttcacctgatattccaccggtttttctcacag 44198038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 20793444 - 20793580
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  20793444 cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 20793543  T
Q  166 gtgatttcacctcagattccaccggtttatctcacag 202  Q
    |||||||||||| | ||||||| ||||||||||||||    
T  20793544 gtgatttcacctgatattccacaggtttatctcacag 20793580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 23929254 - 23929113
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||    
T  23929254 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga 23929155  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||| | ||||||||||||    
T  23929154 aatttgtgatttcacctgatattccactgatttatctcacag 23929113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 29651774 - 29651915
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  29651774 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 29651873  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  29651874 aatttgtgatttcacctgatattccaccggtttttctcacag 29651915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 36662526 - 36662667
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36662526 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36662625  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  36662626 aatttgtgatttcacctgatattccaccggtttttctcacag 36662667  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 36679252 - 36679111
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36679252 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36679153  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||||| | ||||||||||||| ||||||||    
T  36679152 aatttgtgatttcacctgatattccaccggtttttctcacag 36679111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 23204100 - 23203962
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23204100 aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 23204001  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctca 199  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23204000 aatttgtgatttcacctgagattccaccggtttatctca 23203962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 43560199 - 43560288
Alignment:
Q  112 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacag 43560288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 143 - 232
Alignment:
Q  112 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacag 202  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacag 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 20093 - 19955
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| ||||||||  ||||||| ||| |||||| |||||   ||||||||  |||||||||| ||||| ||||||||  | || | ||  |||| |||||    
T  20093 aaaaccttcaaacaggtagtttttgtgaagcttcatgattcaaactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtga 19994  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctca 199  Q
    ||||| || |||| || || |||||||||||||||||||    
T  19993 aatttatggtttctccacaaattccaccggtttatctca 19955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 56288780 - 56288686
Alignment:
Q  106 taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcac 200  Q
    |||||||||||||| ||||| |||||||| ||| | ||||  ||||| | |||||||  |||  |||| || |||||||||||||| ||||||||    
T  56288780 taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcac 56288686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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