View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_high_6 (Length: 547)

Name: NF7406_high_6
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_high_6
NF7406_high_6
[»] chr2 (10 HSPs)
chr2 (19-534)||(3220250-3220763)
chr2 (61-369)||(12504720-12505032)
chr2 (61-369)||(14680894-14681206)
chr2 (192-369)||(39587451-39587646)
chr2 (471-529)||(12505163-12505221)
chr2 (471-529)||(14680705-14680763)
chr2 (471-529)||(39587777-39587835)
chr2 (424-477)||(12505091-12505144)
chr2 (424-477)||(14680782-14680835)
chr2 (424-477)||(39587705-39587758)
[»] chr1 (10 HSPs)
chr1 (66-373)||(52887707-52888022)
chr1 (61-369)||(52608987-52609299)
chr1 (66-368)||(29886958-29887263)
chr1 (472-529)||(52608798-52608855)
chr1 (471-529)||(52888149-52888206)
chr1 (424-477)||(52608875-52608928)
chr1 (424-477)||(52888077-52888130)
chr1 (235-339)||(13728701-13728805)
chr1 (471-511)||(29887395-29887435)
chr1 (433-477)||(29887332-29887376)
[»] scaffold0014 (6 HSPs)
scaffold0014 (61-369)||(173513-173825)
scaffold0014 (61-369)||(143719-144031)
scaffold0014 (471-529)||(144162-144220)
scaffold0014 (471-529)||(173956-174014)
scaffold0014 (424-477)||(173884-173937)
scaffold0014 (424-477)||(144090-144143)
[»] chr8 (8 HSPs)
chr8 (61-369)||(44197897-44198209)
chr8 (66-369)||(20793444-20793751)
chr8 (61-369)||(23928942-23929254)
chr8 (471-529)||(23928753-23928811)
chr8 (471-529)||(44198340-44198398)
chr8 (424-477)||(23928830-23928883)
chr8 (424-477)||(44198268-44198321)
chr8 (424-471)||(20793810-20793857)
[»] chr7 (15 HSPs)
chr7 (61-369)||(48513409-48513721)
chr7 (61-369)||(48727851-48728163)
chr7 (61-369)||(3718203-3718514)
chr7 (94-369)||(42105178-42105457)
chr7 (471-529)||(42105588-42105646)
chr7 (471-529)||(48513220-48513278)
chr7 (471-529)||(3718014-3718072)
chr7 (471-529)||(48727662-48727720)
chr7 (424-477)||(42105516-42105569)
chr7 (424-477)||(48513297-48513350)
chr7 (424-477)||(48727739-48727792)
chr7 (424-477)||(3718091-3718144)
chr7 (241-293)||(34529808-34529860)
chr7 (241-293)||(45574882-45574934)
chr7 (244-293)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (61-369)||(29651774-29652086)
chr6 (472-529)||(29652218-29652275)
chr6 (424-477)||(29652145-29652198)
[»] chr5 (12 HSPs)
chr5 (61-369)||(36678940-36679252)
chr5 (61-369)||(36662526-36662838)
chr5 (61-339)||(23203822-23204100)
chr5 (112-369)||(43560199-43560465)
chr5 (471-529)||(36662969-36663027)
chr5 (472-529)||(36678751-36678808)
chr5 (473-529)||(23198496-23198552)
chr5 (424-477)||(36662897-36662950)
chr5 (424-477)||(36678828-36678881)
chr5 (424-477)||(43560524-43560577)
chr5 (424-477)||(23198573-23198626)
chr5 (338-369)||(23198685-23198716)
[»] chr3 (10 HSPs)
chr3 (61-369)||(38327668-38327980)
chr3 (61-369)||(46073352-46073662)
chr3 (61-369)||(55488644-55488956)
chr3 (471-529)||(46073793-46073851)
chr3 (472-529)||(38327479-38327536)
chr3 (471-529)||(55489087-55489145)
chr3 (424-477)||(38327556-38327609)
chr3 (424-477)||(46073721-46073774)
chr3 (424-477)||(55489015-55489068)
chr3 (241-293)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (112-369)||(143-409)
scaffold1284 (424-477)||(468-521)
[»] chr4 (1 HSPs)
chr4 (106-293)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (61-263)||(19891-20093)


Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 3220250 - 3220763
Alignment:
Q  19 attgccagctcagtcagtcacagtattgacaagtgatttgttaaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220250 attgccagctcagtcagtcacagtattgacaagtgatttgttaaaagct--aaacgagtagtttatgttaagcttgatgatatgaactaccttcaatgga 3220347  T
Q  119 agcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagc 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220348 agcaacaagtcgaaggtgttcttcgcgaaacaaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagc 3220447  T
Q  219 aggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3220448 aggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcgctgctttcgcgattc 3220547  T
Q  319 gttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagaatcttgctcttcccatagttagtgcctcacacgaac 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  3220548 gttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagcaaagattcttgctcttcccatagttagtgcttcacacgaac 3220647  T
Q  419 gcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcctga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220648 gcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagggacctaattgaagttgttcttgaagcacttcctga 3220747  T
Q  519 agagtttgaccttatg 534  Q
    ||||||||||| ||||    
T  3220748 agagtttgaccctatg 3220763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 12504720 - 12505032
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  12504720 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 12504819  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  12504820 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 12504919  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  12504920 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 12505019  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  12505020 agttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 14681206 - 14680894
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  14681206 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 14681107  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  14681106 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 14681007  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  14681006 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 14680907  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  14680906 agttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 192 - 369
Target Start/End: Original strand, 39587451 - 39587646
Alignment:
Q  192 ttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacct 277  Q
    |||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| |||||||||||||    
T  39587451 ttatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacct 39587550  T
Q  278 ggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttgggatgagattcatagttactgcttca 369  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||||||||| |||| |||||||||||    
T  39587551 ggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttgggatgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 12505163 - 12505221
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505163 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 12505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 14680763 - 14680705
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680763 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 14680705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 39587777 - 39587835
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39587777 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaggagtttgacc 39587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 12505091 - 12505144
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12505091 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 12505144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 14680835 - 14680782
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  14680835 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 14680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 39587705 - 39587758
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39587705 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 39587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 66 - 373
Target Start/End: Original strand, 52887707 - 52888022
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||    
T  52887707 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt 52887806  T
Q  166 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcg----cgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagat 261  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52887807 gtgatttcacctgagattccaccggtttatctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagat 52887906  T
Q  262 tctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcata 357  Q
    || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||| ||||    
T  52887907 tcattgctctgcacctggattctttcaacgatttcgccttcactactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccata 52888006  T
Q  358 gttactgcttcatgca 373  Q
    ||||||||||||||||    
T  52888007 gttactgcttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 52609299 - 52608987
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  52609299 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 52609200  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  52609199 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 52609100  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  52609099 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 52609000  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  52608999 agttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 66 - 368
Target Start/End: Original strand, 29886958 - 29887263
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  29886958 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 29887057  T
Q  166 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 265  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |    
T  29887058 gtgatttcgcctgagattccaccggtttatctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcat 29887156  T
Q  266 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 361  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  29887157 tgctctgcacctggattctttcaacgatttcaccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagtta 29887256  T
Q  362 ctgcttc 368  Q
    |||||||    
T  29887257 ctgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 52608855 - 52608798
Alignment:
Q  472 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608855 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 52608798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 52888149 - 52888206
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52888149 agtctctcacagg-acctaattgaagttgttcttgaagcacttcctgaagagtttgacc 52888206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 52608928 - 52608875
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52608928 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 52888077 - 52888130
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52888077 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  235 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 334  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  335 cgtgg 339  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 511
Target Start/End: Original strand, 29887395 - 29887435
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcac 511  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887395 agtctctcacagggacctaattgaagttgttcttgaagcac 29887435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 477
Target Start/End: Original strand, 29887332 - 29887376
Alignment:
Q  433 tgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  29887332 tgtcgccgaattcattgctcgaattcgcgcaatttcagagtctct 29887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 173513 - 173825
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  173513 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 173612  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  173613 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 173712  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  173713 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 173812  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  173813 agttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 143719 - 144031
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  143719 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 143818  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  143819 aatttgtgatttcacctgagattccatcggtttatctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 143918  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| |||||| |||||||||||||||||||||| | |||||| || |||||||| ||||||||||||| |||||| |    ||||||||||||||| |||    
T  143919 ttcattgctcagcacctggattctttcaacgatctcgccttcgctactttcgcggttcgttctccttctccactcttggcaggtttgggatgagatccat 144018  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  144019 agttactgcttca 144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 144162 - 144220
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144162 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 144220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 173956 - 174014
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173956 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 174014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 173884 - 173937
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  173884 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 144090 - 144143
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  144090 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 44197897 - 44198209
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  44197897 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 44197996  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  44197997 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 44198096  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  44198097 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 44198196  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  44198197 agttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 66 - 369
Target Start/End: Original strand, 20793444 - 20793751
Alignment:
Q  66 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 165  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  20793444 cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 20793543  T
Q  166 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 265  Q
    |||||||||||| | ||||||| ||||||||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| |    
T  20793544 gtgatttcacctgatattccacaggtttatctcacagatgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcat 20793643  T
Q  266 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 361  Q
    |||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||    
T  20793644 tgctctgcacctggattctttcaacgatatcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagtta 20793743  T
Q  362 ctgcttca 369  Q
    ||||||||    
T  20793744 ctgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 23929254 - 23928942
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||    
T  23929254 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga 23929155  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||    
T  23929154 aatttgtgatttcacctgatattccactgatttatctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaaga 23929055  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| |||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  23929054 ttcattgctctgcacctgaattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 23928955  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  23928954 agttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 23928811 - 23928753
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928811 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 23928753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 44198340 - 44198398
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198340 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 44198398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 23928883 - 23928830
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  23928883 ttcacgcactgtcgctgaattcattgctcgaattcgcacaatttcagagtctct 23928830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 44198268 - 44198321
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44198268 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 44198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 20793810 - 20793857
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcaga 471  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20793810 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcaga 20793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 48513721 - 48513409
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  48513721 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48513622  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  48513621 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 48513522  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48513521 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48513422  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  48513421 agttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 48728163 - 48727851
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||    
T  48728163 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48728064  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||    
T  48728063 aatttgtgatttcacctgagattccaccggtttatctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaaga 48727964  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48727963 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48727864  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  48727863 agttactgcttca 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 3718514 - 3718203
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| | |||||| ||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||||    
T  3718514 aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttct-cgcggaacgaagatggtga 3718416  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  3718415 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaaga 3718316  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||     
T  3718315 ttcattgctctgcacctggattctttcaacgattttgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccac 3718216  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  3718215 agttactgcttca 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 94 - 369
Target Start/End: Original strand, 42105178 - 42105457
Alignment:
Q  94 gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggttt 193  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  42105178 gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggttt 42105277  T
Q  194 atctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
    |||||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42105278 atctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgat 42105377  T
Q  294 ttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 369  Q
    || |||||  || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  42105378 ttcgccttggctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 42105588 - 42105646
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105588 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 42105646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 48513278 - 48513220
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513278 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 48513220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 3718072 - 3718014
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3718072 agtctctcacagggacctaattgaagttgttcttgaagcacttccagaagagtttgacc 3718014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 48727720 - 48727662
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48727720 agtctctcacagggtcctaattgaagttgttcttgaagcacttcctgaagagtttgacc 48727662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 42105516 - 42105569
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42105516 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 42105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 48513350 - 48513297
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48513350 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 48513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 48727792 - 48727739
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  48727792 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 48727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 3718144 - 3718091
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3718144 ttcacgcactgtcgttgaattcattgctcgaattcacgcaatttcagagtctct 3718091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  241 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  241 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  244 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 29651774 - 29652086
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  29651774 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 29651873  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  29651874 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 29651973  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  29651974 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 29652073  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  29652074 agttactgcttca 29652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 29652218 - 29652275
Alignment:
Q  472 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652218 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 29652275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 29652145 - 29652198
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29652145 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 29652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 36679252 - 36678940
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36679252 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36679153  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36679152 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36679053  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36679052 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36678953  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  36678952 agttactgcttca 36678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 36662526 - 36662838
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36662526 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36662625  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36662626 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36662725  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36662726 ttcattgctctgcacctggattctttcaacgatttcggcttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36662825  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  36662826 agttactgcttca 36662838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 61 - 339
Target Start/End: Complemental strand, 23204100 - 23203822
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23204100 aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 23204001  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||| |||| |||| ||||||||||||||||||||| ||    
T  23204000 aatttgtgatttcacctgagattccaccggtttatctcataaatgcagcacgtggagcaggaacggagaatcctgtttacactgaatgggaagaacacga 23203901  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg 339  Q
    ||  ||||||| ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  23203900 ttaattgctctacacctggattctttcaacgatttcgcctttgctactttcgcgattcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 112 - 369
Target Start/End: Original strand, 43560199 - 43560465
Alignment:
Q  112 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 211  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 43560297  T
Q  212 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 305  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  43560298 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 43560397  T
Q  306 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 369  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  43560398 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 43560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 36662969 - 36663027
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36662969 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 36663027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 36678808 - 36678751
Alignment:
Q  472 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678808 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 36678751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 23198552 - 23198496
Alignment:
Q  473 tctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23198552 tctctcatagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 23198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 36662897 - 36662950
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  36662897 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 36662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 36678881 - 36678828
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  36678881 ttcacgcactgtctctgaattcattgctcgaattcgcgcaatttcagagtctct 36678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 43560524 - 43560577
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  43560524 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 43560577  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 23198626 - 23198573
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  23198626 ttcacgcactgtcgctgaattcattgctcgaatttgcacaatttcagagtctct 23198573  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 369
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  338 ggtttgggatgagattcatagttactgcttca 369  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

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Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 38327980 - 38327668
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  38327980 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 38327881  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  38327880 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 38327781  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  38327780 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 38327681  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  38327680 agttactgcttca 38327668  T

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Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 46073352 - 46073662
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||    
T  46073352 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga 46073451  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  46073452 aatttgtgatttcacctgagattcca--ggtttatctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 46073549  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg----tttgggatgagattcat 356  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||| |||    ||||||||||||| |||    
T  46073550 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctcctttgccactcatggcagatttgggatgagatccat 46073649  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  46073650 agttactgcttca 46073662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 61 - 369
Target Start/End: Original strand, 55488644 - 55488956
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  55488644 aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 55488743  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  55488744 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaaga 55488843  T
Q  261 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggt----ttgggatgagattcat 356  Q
    ||| ||||||||||||||| ||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||     |||||||||||| ||     
T  55488844 ttcattgctctgcacctgggttctttcaacgatttcgccttcgctactttcgcggttcgttctccttcgccactcgtggcaggcttgggatgagatccac 55488943  T
Q  357 agttactgcttca 369  Q
    |||||||||||||    
T  55488944 agttactgcttca 55488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 46073793 - 46073851
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073793 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 46073851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 38327536 - 38327479
Alignment:
Q  472 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327536 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 38327479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 55489087 - 55489145
Alignment:
Q  471 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgacc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55489087 agtctctcacagggacctaattgaagttgttcttgaagcacttcttgaagagtttgacc 55489145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 38327609 - 38327556
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38327609 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 38327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 46073721 - 46073774
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  46073721 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaaattcagagtctct 46073774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 55489015 - 55489068
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  55489015 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttctgagtctct 55489068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  241 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 112 - 369
Target Start/End: Original strand, 143 - 409
Alignment:
Q  112 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 211  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 241  T
Q  212 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 305  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  242 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 341  T
Q  306 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 369  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  342 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 468 - 521
Alignment:
Q  424 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 477  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  468 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 56288780 - 56288593
Alignment:
Q  106 taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatg 205  Q
    |||||||||||||| ||||| |||||||| ||| | ||||  ||||| | |||||||  |||  |||| || |||||||||||||| |||||||| || |    
T  56288780 taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcaccgacg 56288681  T
Q  206 aagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 293  Q
      || ||||  || |||||| |||| || || || || ||||||||||||||||||||| |||| || || |||||||| || |||||    
T  56288680 ctgctcgcgccgccggaacggagaatccggcgtataccgaatgggaagaacaagattctctgctgtgtacatggattctctccacgat 56288593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 263
Target Start/End: Complemental strand, 20093 - 19891
Alignment:
Q  61 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 160  Q
    |||| ||||||||  ||||||| ||| |||||| |||||   ||||||||  |||||||||| ||||| ||||||||  | || | ||  |||| |||||    
T  20093 aaaaccttcaaacaggtagtttttgtgaagcttcatgattcaaactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtga 19994  T
Q  161 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 260  Q
    ||||| || |||| || || ||||||||||||||||||| | |||  || |||||||| |||| | | || ||||| ||  ||||||||||||| |||||    
T  19993 aatttatggtttctccacaaattccaccggtttatctcaaacatgtcgctcgcgaagctggaatggaaaaccctgcgtattctgaatgggaagagcaaga 19894  T
Q  261 ttc 263  Q
    |||    
T  19893 ttc 19891  T

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