View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_10 (Length: 509)
Name: NF7406_low_10
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 12972744 - 12973226
Alignment:
| Q |
18 |
tataacaagttcacaaaattgtccccgttaactattgactattaacaactgtcataaacgcatagtagtatataatgacttgaaagttgtgtatacacaa |
117 |
Q |
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| T |
12972744 |
tataacaagttcacaaaattgtccccattaactattgactattaacaactgtcataaacgcatagtagtatataatgacttgaaagctgtgtatacacaa |
12972843 |
T |
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| Q |
118 |
tataaattaggggtaaaagttgaatcaattaattaatggtacattgaaaaagcaaaacgacgcttatttgaaaacaaattttatttgctaaagcgacacg |
217 |
Q |
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| T |
12972844 |
tataaattaggggtaaaagttgaatcaattaattaatggtacattgaaaaagcaaaacgacgcttattttaaaacaaattttatttgctaaagcgacacg |
12972943 |
T |
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| Q |
218 |
tgttttggaagagagggagtatgtcatcaaaacatgaatgagttctctaaatcatagagcaaaacttaaataagaaaaagcaccagaaactacatacaag |
317 |
Q |
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| T |
12972944 |
tgttttggaagagagggagtatgtcatcaaaacatgaatgagttctctaaatcatagagcaaaacttaaataagaaaaagcaccagaaactacatacaag |
12973043 |
T |
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| Q |
318 |
ctcatcaatggcaaggccaagtgacatgtttccaaaggtattattgattaactttgagtacttagttgcctcttggtcatggtttatgaagttcctgtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12973044 |
ctcatcaatggcaaggccaagtgacatgtttccaaaggtattattgattaactttgagtacttagttgcctcttggtcatggtttatgaagttcctgtta |
12973143 |
T |
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| Q |
418 |
aaaggagtcacccaagcaaatatgaatgatgtgagtgttacacaagtatggaacaaaaatacatacaagtcacaaatattctt |
500 |
Q |
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| T |
12973144 |
aaaggagtcacccaagcaaatatgaatgatgtgagtgttacacaagtatggaacaaaaatacatacaagtcacaaatattctt |
12973226 |
T |
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