View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_low_12 (Length: 483)

Name: NF7406_low_12
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_low_12
NF7406_low_12
[»] chr2 (2 HSPs)
chr2 (57-460)||(3019698-3020101)
chr2 (394-458)||(7165668-7165732)
[»] chr1 (2 HSPs)
chr1 (400-458)||(6541114-6541172)
chr1 (418-458)||(27463845-27463885)
[»] chr7 (2 HSPs)
chr7 (409-458)||(27376341-27376390)
chr7 (305-385)||(8062890-8062970)
[»] chr6 (1 HSPs)
chr6 (318-399)||(3712282-3712363)
[»] chr3 (2 HSPs)
chr3 (307-400)||(7672345-7672438)
chr3 (403-458)||(34979114-34979169)
[»] chr4 (5 HSPs)
chr4 (394-458)||(17381488-17381552)
chr4 (97-129)||(35949888-35949920)
chr4 (307-382)||(37687259-37687334)
chr4 (348-397)||(32123824-32123873)
chr4 (394-458)||(11839872-11839936)
[»] chr8 (1 HSPs)
chr8 (401-458)||(26018692-26018749)
[»] chr5 (1 HSPs)
chr5 (403-460)||(29502357-29502414)
[»] scaffold0003 (1 HSPs)
scaffold0003 (308-336)||(104342-104370)


Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 57 - 460
Target Start/End: Original strand, 3019698 - 3020101
Alignment:
Q  57 tgaaaggggttgcgtgtggccgtcatgaaaattattattgctgcttacggcatcgacgtgtagcagttgaaaaagctaccaccttctcttcttttgtttt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3019698 tgaaaggggttgcgtgtggccgtcatgaaaattattattgctgcttacggcatcgacgtgtagcagttgaaaaagctaccaccttctcttcttttgtttt 3019797  T
Q  157 tctttattctttattattatatgctgtcattcccacaccctcttctcaaaataagttaaaccaatttacgtactattactattttaaacagtcaaatgca 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3019798 tctttattctttattattatatgctgtcattcccacaccctcttctcaaaataagttaaaccaatttacgtactattactattttaaacagtcaaatgca 3019897  T
Q  257 tttttatttgactaatgtcactctttaattcaatttagaattgatattttattttggtccttgaatgtataaagaatagttataataacttttcaatata 356  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3019898 tttttatttgactaatgtcactctttaattcaatttagaattaatattttattttggtccttgaatgtataaagaatagttataataatctttcaatata 3019997  T
Q  357 ttgaaattataaaatagtatttgattttgtatttcgttagtcattgacattaaaatattgcgttaatatttttatattagtttttcaatttacttactta 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3019998 ttgaaattataaaatagtctttgattttgtatttcgttagtcattgacattaaaatattgcgttaatatttttatattagttcttcaatttacttactta 3020097  T
Q  457 tttt 460  Q
    ||||    
T  3020098 tttt 3020101  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 458
Target Start/End: Original strand, 7165668 - 7165732
Alignment:
Q  394 tagtcattgacattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||| || ||||||||||| |  ||||||||||| |||||||| ||||||| ||||||||||||    
T  7165668 tagtccttaacattaaaataatttgttaatattttcatattagtctttcaatatacttacttatt 7165732  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 6541114 - 6541172
Alignment:
Q  400 ttgacattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    |||||||||||||||| |||||||||| | ||||||||  |||||| ||||||||||||    
T  6541114 ttgacattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttatt 6541172  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 27463885 - 27463845
Alignment:
Q  418 gttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||||||| |||||||||| ||||||| ||||||||||||    
T  27463885 gttaatattgttatattagtctttcaatatacttacttatt 27463845  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 27376341 - 27376390
Alignment:
Q  409 aaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||||| |||||||||| | |||||||||||||||| ||||||||||||    
T  27376341 aaatatttcgttaatattatcatattagtttttcaatatacttacttatt 27376390  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 8062970 - 8062890
Alignment:
Q  305 ttattttggtccttgaatgtataaagaatagttataataacttttcaatatattgaaattataaaatagtatttgattttg 385  Q
    |||||||||||||||||||| ||| || |||| | ||||   | ||||| |||| ||||| ||||||||||| ||||||||    
T  8062970 ttattttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgattttg 8062890  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 3712363 - 3712282
Alignment:
Q  318 tgaatgtataaagaatagttataataacttttcaatatattgaaattataaaatagtatttgattttgtatttcgttagtca 399  Q
    ||||||| ||| ||||||||||||||| |||| ||| |||||||||| |||||||||  |||||| || ||| ||| |||||    
T  3712363 tgaatgtgtaacgaatagttataataatttttgaatgtattgaaattctaaaatagtcattgattatgcattccgtcagtca 3712282  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 7672345 - 7672438
Alignment:
Q  307 attttggtccttgaatgtataaagaatagttataataacttttcaatatattgaaattataaaatagtatttgattttgtatttcgttagtcat 400  Q
    |||||||||||||||||| |||  ||||||||||||||  ||| ||| |||| ||||| ||||||| |   |||||||||| || |||||||||    
T  7672345 attttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaataattcatgattttgtactttgttagtcat 7672438  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 458
Target Start/End: Complemental strand, 34979169 - 34979114
Alignment:
Q  403 acattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||||||||||| |||||||||| | ||||||||  |||||| ||||||||||||    
T  34979169 acattaaaatatttcgttaatattatcatattagtcattcaatatacttacttatt 34979114  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 458
Target Start/End: Complemental strand, 17381552 - 17381488
Alignment:
Q  394 tagtcattgacattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||| |||| ||||||||||| |||||||||| | ||||||||  |||||| ||||||||||||    
T  17381552 tagtccttgatattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttatt 17381488  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 35949920 - 35949888
Alignment:
Q  97 ctgcttacggcatcgacgtgtagcagttgaaaa 129  Q
    |||||||||||||||||||||||||||||||||    
T  35949920 ctgcttacggcatcgacgtgtagcagttgaaaa 35949888  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 37687334 - 37687259
Alignment:
Q  307 attttggtccttgaatgtataaagaatagttataataacttttcaatatattgaaattataaaatagtatttgatt 382  Q
    |||||||||  ||||||||||| || |||||| ||||| || |||||||||  ||||| ||||||||| |||||||    
T  37687334 attttggtctctgaatgtataatgattagttacaataatttctcaatatatcaaaattttaaaatagtttttgatt 37687259  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 32123824 - 32123873
Alignment:
Q  348 ttcaatatattgaaattataaaatagtatttgattttgtatttcgttagt 397  Q
    |||||| |||| ||||| ||||||||| |||||||||||| |||||||||    
T  32123824 ttcaatgtattaaaattttaaaatagtctttgattttgtacttcgttagt 32123873  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 458
Target Start/End: Original strand, 11839872 - 11839936
Alignment:
Q  394 tagtcattgacattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||| |||||||||||||| | |||||||||| | ||||||||  ||||||  |||||||||||    
T  11839872 tagtccttgacattaaaatacttcgttaatattgtcatattagtccttcaatacacttacttatt 11839936  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 26018749 - 26018692
Alignment:
Q  401 tgacattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatt 458  Q
    ||||||||||||| | |||||| ||| ||||||||||  |||||| ||||||||||||    
T  26018749 tgacattaaaatagttcgttaacattgttatattagtcattcaatatacttacttatt 26018692  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 29502414 - 29502357
Alignment:
Q  403 acattaaaatattgcgttaatatttttatattagtttttcaatttacttacttatttt 460  Q
    ||||||||||||| |||||||||| |  ||||||||||||||| |||||  |||||||    
T  29502414 acattaaaatatttcgttaatattgtcgtattagtttttcaatatacttgtttatttt 29502357  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 104342 - 104370
Alignment:
Q  308 ttttggtccttgaatgtataaagaatagt 336  Q
    |||||||||||||||||||||||||||||    
T  104342 ttttggtccttgaatgtataaagaatagt 104370  T

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