View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_low_15 (Length: 449)

Name: NF7406_low_15
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_low_15
NF7406_low_15
[»] chr6 (2 HSPs)
chr6 (80-308)||(1600169-1600394)
chr6 (80-308)||(4850945-4851171)
[»] chr2 (3 HSPs)
chr2 (80-308)||(41753536-41753762)
chr2 (200-308)||(5787764-5787872)
chr2 (120-154)||(6467552-6467586)
[»] chr8 (7 HSPs)
chr8 (80-307)||(13757054-13757278)
chr8 (80-308)||(37364719-37364945)
chr8 (80-300)||(23141167-23141386)
chr8 (249-308)||(42796825-42796884)
chr8 (105-154)||(21587637-21587686)
chr8 (96-147)||(10900322-10900373)
chr8 (204-307)||(21587748-21587850)
[»] chr7 (1 HSPs)
chr7 (82-308)||(12978117-12978342)
[»] chr3 (6 HSPs)
chr3 (81-308)||(50331374-50331592)
chr3 (200-308)||(12745441-12745550)
chr3 (200-307)||(36097176-36097283)
chr3 (105-154)||(36097340-36097389)
chr3 (203-273)||(29195977-29196048)
chr3 (105-154)||(12745325-12745374)
[»] scaffold0036 (1 HSPs)
scaffold0036 (200-308)||(49115-49224)
[»] chr5 (3 HSPs)
chr5 (200-308)||(33012824-33012933)
chr5 (215-306)||(38012566-38012658)
chr5 (105-154)||(33012718-33012767)
[»] chr4 (8 HSPs)
chr4 (200-308)||(282998-283107)
chr4 (80-152)||(13668468-13668540)
chr4 (80-152)||(13681325-13681397)
chr4 (105-154)||(283164-283213)
chr4 (105-154)||(39976089-39976138)
chr4 (200-307)||(39975920-39976027)
chr4 (242-308)||(13230457-13230522)
chr4 (105-152)||(13230621-13230668)
[»] chr1 (1 HSPs)
chr1 (96-154)||(43386037-43386095)
[»] scaffold0380 (1 HSPs)
scaffold0380 (246-307)||(15571-15632)
[»] scaffold0159 (1 HSPs)
scaffold0159 (200-308)||(32137-32245)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 80 - 308
Target Start/End: Complemental strand, 1600394 - 1600169
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaata 179  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1600394 tagtgattgttttgtccgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcattctacccaaaaaataaata 1600295  T
Q  180 aactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaa 279  Q
    ||||||||         |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  1600294 aactcaat---aaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaaacatgcattttttaattgtgagatcccaccaaaaagcaaaa 1600198  T
Q  280 gtgaagatattttacgtaatagaggttgg 308  Q
    |||||| |||||||| |||||||||||||    
T  1600197 gtgaaggtattttacataatagaggttgg 1600169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 80 - 308
Target Start/End: Complemental strand, 4851171 - 4850945
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaata 179  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  4851171 tagtgattgttttatccgtggaaacattgaaaatagagggagttattggtaattttatgatttagttgaaggactattcattctacccaaaaaataaata 4851072  T
Q  180 aactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaa 279  Q
    ||||||||         |||||||  |||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4851071 aactcaat--aaaaaaatgacacacgattttaaagtgtcgttttgtcaaatcaacaaaaacatgcattttttcattgttagatcccaccaaaaagcaaaa 4850974  T
Q  280 gtgaagatattttacgtaatagaggttgg 308  Q
    || ||| |||||||  ||||| |||||||    
T  4850973 gtaaaggtattttatataataaaggttgg 4850945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 80 - 308
Target Start/End: Original strand, 41753536 - 41753762
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaata 179  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  41753536 tagtgattgttttgtccgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaacgagtattcattctacccaaaaaataaata 41753635  T
Q  180 aactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaa 279  Q
    ||||||||         |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41753636 aactcaat--aaaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaaacatgcattttttcattgttagatcccaccaaaaagcaaaa 41753733  T
Q  280 gtgaagatattttacgtaatagaggttgg 308  Q
    |||||| |||||||| ||||| |||||||    
T  41753734 gtgaaggtattttacataataaaggttgg 41753762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 5787764 - 5787872
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    ||||||| |||||| ||||| || ||||||||   |||| || |||||||||||||||||| ||| ||||||||||| ||||||||  |||||||  |||    
T  5787764 cacataaatttaaaatgtcgtttcgtcaactccttaaaacacatgcattttttcattgttatatctcaccaaaaagcgaaagtgaatgtatttta-ataa 5787862  T
Q  299 tagaggttgg 308  Q
    ||||||||||    
T  5787863 tagaggttgg 5787872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 6467586 - 6467552
Alignment:
Q  120 agttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||||||||||||| ||||||||||||||    
T  6467586 agttattggtaattttatgggttagttgaaggagt 6467552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 80 - 307
Target Start/End: Complemental strand, 13757278 - 13757054
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaata 179  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13757278 tagtgattgttttgtccgtggaaacattgaaaatagagcgagttattggttattttatggtttagttgaaggagtattcattctacccaaaaaataaata 13757179  T
Q  180 aactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaa 279  Q
    ||||||||         |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13757178 aactcaat---aaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaaacatacattttttcattgttagatcccaccaaaaagcaaaa 13757082  T
Q  280 gtgaagatattttacgtaatagaggttg 307  Q
    |||||| |||||||| ||||||||||||    
T  13757081 gtgaaggtattttacataatagaggttg 13757054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 80 - 308
Target Start/End: Original strand, 37364719 - 37364945
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaata 179  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  37364719 tagtgattgttttgtccgtggaaacattgaaaataaagcgagttattggtaattttatggtttaattgaaggagtattctttctacccaaaaaataaata 37364818  T
Q  180 aactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaa 279  Q
    ||||||||         |||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  37364819 aactcaat--aaaaagatgacacaagattttaaagtgtcgctttgtcaactcagcaaaaacatgcattttttcattgttagatcacaccaaaaagcaaaa 37364916  T
Q  280 gtgaagatattttacgtaatagaggttgg 308  Q
    |||||| |||||||| |||||||||||||    
T  37364917 gtgaaggtattttacataatagaggttgg 37364945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 80 - 300
Target Start/End: Original strand, 23141167 - 23141386
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctaccc-aaaaaataaat 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  23141167 tagtgattgttttgtccgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattgattctacccaaaaaaataaat 23141266  T
Q  179 aaactcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaa 278  Q
    |||||||||         |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  23141267 aaactcaat--aaaaaaatgacacatgattttaaagtgtcgctttgtcaactcagcaaaaacatgcattttttcattgttagatcctaccaaaaagcaaa 23141364  T
Q  279 agtgaagatattttacgtaata 300  Q
    ||||||| |||||||| |||||    
T  23141365 agtgaaggtattttacataata 23141386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 42796825 - 42796884
Alignment:
Q  249 tttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaatagaggttgg 308  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  42796825 tttcattgttagatcacaccaaaaagcaaaagtgaaggtattttacataatagaggttgg 42796884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 21587637 - 21587686
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  21587637 attgaaaataaagtgagttattggtaattttatggtttagttgaaggagt 21587686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 10900322 - 10900373
Alignment:
Q  96 cgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttg 147  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  10900322 cgtggaagtattgaaaatagatcgagttattggtaattttatggtttagttg 10900373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 21587748 - 21587850
Alignment:
Q  204 taattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaataga 302  Q
    |||||||||| | ||| ||||||||| | |||||| || ||||||||||||| |||||||||  ||||| ||||||||||||   ||||||  |||||||    
T  21587748 taattttaaaatatcgttttgtcaacacggcaaaacacatgcattttttcatcgttagatcc--ccaaagagcaaaagtgaaagaattttaaataataga 21587845  T
Q  303 ggttg 307  Q
    |||||    
T  21587846 ggttg 21587850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 12978342 - 12978117
Alignment:
Q  82 gtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaa-taaataa 180  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  12978342 gtgattgttttatccgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggactattcattctacccaaaaaaataaataa 12978243  T
Q  181 actcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaag 280  Q
    |||||||         |||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  12978242 actcaataaaaaaa--tgacacatgattttaaagtgtcgctttgtcaactcagcaaaaacacgcattttttcattgttagatcccaccaaaaaacaaaag 12978145  T
Q  281 tgaagatattttacgtaatagaggttgg 308  Q
    |||||||||||||  ||||| |||||||    
T  12978144 tgaagatattttatataataaaggttgg 12978117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 50331374 - 50331592
Alignment:
Q  81 agtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagtattcagtctacccaaaaaataaataa 180  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  50331374 agtgattgttttgtccgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaagaagtattcattctacccaaaaattaaataa 50331473  T
Q  181 actcaatnnnnnnnnntgacacataattttaaagtgtcgctttgtcaactcagcaaaaacctgcattttttcattgttagatcccaccaaaaagcaaaag 280  Q
    |||||||         |||||||| ||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50331474 actcaat--aaaaaaatgacacatgattt-------tcgctttgtcaactcagcaaaaacatgcattttttcattgttagatcccaccaaaaagcaaaag 50331564  T
Q  281 tgaagatattttacgtaatagaggttgg 308  Q
    ||||| |||||||| ||||||| |||||    
T  50331565 tgaaggtattttacataatagaagttgg 50331592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 12745441 - 12745550
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| | ||| |||||||||||||||||| || ||  |||||| |||| |||||||| | ||| |||||||| |||| ||||||| ||||    
T  12745441 cacataattttaaaatatcgttttgtcaactcagcaaaacacatgattttttttattgctagatccccctaaagagcaaaagggaaggtattttaagtaa 12745540  T
Q  299 tagaggttgg 308  Q
    ||||||||||    
T  12745541 tagaggttgg 12745550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 36097283 - 36097176
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| | ||| ||||||||||| |||||| || |||||||||||||||||||||||| ||||| || ||||||||||  ||||||  |||    
T  36097283 cacataattttaaaatatcgttttgtcaactcggcaaaacacatgcattttttcattgttagatccc-ccaaagagtaaaagtgaaggaattttaaataa 36097185  T
Q  299 tagaggttg 307  Q
     ||||||||    
T  36097184 cagaggttg 36097176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 36097389 - 36097340
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  36097389 attgaaaataaagtgagttattggtaattttatggtttagttgaaggagt 36097340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 29196048 - 29195977
Alignment:
Q  203 ataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaa 273  Q
    ||||||||||| |||  |||||||||||||  |||| || ||||||||||||||||||||||||||||||||    
T  29196048 ataattttaaaatgttcctttgtcaactcattaaaacacatgcattttttcattgttagatcccaccaaaaa 29195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 12745325 - 12745374
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| || || |||||||||||||||||| ||||||||||||||    
T  12745325 attgaaaataaagtgaattattggtaattttatggcttagttgaaggagt 12745374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 49115 - 49224
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| ||||||| |||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||  |||||||  |||    
T  49115 cacataattttaaaatgtcgctatgtcaactcagcaaaacacatgcactttttcattgttagattccaccaaaaagcaaaagtgaatgtattttaaataa 49214  T
Q  299 tagaggttgg 308  Q
    ||||| ||||    
T  49215 tagagtttgg 49224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 33012824 - 33012933
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| | ||| |||||||| || |||||| || ||||||||||||||||||||||||  |||| ||||||||||||| |||||||  |||    
T  33012824 cacataattttaaaatatcgttttgtcaattcggcaaaacacatgcattttttcattgttagatccccgcaaagagcaaaagtgaaggtattttaaataa 33012923  T
Q  299 tagaggttgg 308  Q
    ||||||||||    
T  33012924 tagaggttgg 33012933  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 38012566 - 38012658
Alignment:
Q  215 tgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaatagaggtt 306  Q
    |||| ||||||||||||| ||||| || ||||||||| ||||||||| |||||||||||||||||||||||  |||||||  |||||||||||    
T  38012566 tgtcactttgtcaactcatcaaaacacatgcatttttccattgttagttcccaccaaaaagcaaaagtgaatgtattttaaataatagaggtt 38012658  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 33012718 - 33012767
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  33012718 attgaaaataaagtgagttattagtagttttatggtttagttgaaggagt 33012767  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 283107 - 282998
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| | ||| |||||||| || |||||| || ||||||||||||||||||||||||  |||| ||||||||||||| |||||||  |||    
T  283107 cacataattttaaaatatcgttttgtcaattcggcaaaacacatgcattttttcattgttagatccccgcaaagagcaaaagtgaaggtattttaaataa 283008  T
Q  299 tagaggttgg 308  Q
    ||||||||||    
T  283007 tagaggttgg 282998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 13668468 - 13668540
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaagga 152  Q
    |||||| ||||||||  ||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  13668468 tagtgagtgttttgtgggtggaagtattgaaaatagagggagttattgataattttatggtttagttgaagga 13668540  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 13681325 - 13681397
Alignment:
Q  80 tagtgattgttttgttcgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaagga 152  Q
    |||||| ||||||||  ||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  13681325 tagtgagtgttttgtgggtggaagtattgaaaatagagggagttattgataattttatggtttagttgaagga 13681397  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 283213 - 283164
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  283213 attgaaaataaagcgagttattggtagttttatggtttagttgaaggagt 283164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 39976138 - 39976089
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  39976138 attgaaaataaagtgagttattggtaattttatggtttagttgaaggagt 39976089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 39976027 - 39975920
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    |||||||||||||| | ||| ||||||||||| |||||| || |||||||||| ||||||||||| | ||||| ||||||||||||   ||||||  |||    
T  39976027 cacataattttaaaatatcgttttgtcaactcggcaaaacacatgcatttttttattgttagatctc-ccaaagagcaaaagtgaaagaattttaaataa 39975929  T
Q  299 tagaggttg 307  Q
    |||||||||    
T  39975928 tagaggttg 39975920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 13230522 - 13230457
Alignment:
Q  242 tgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaatagaggttgg 308  Q
    |||||||||||||||||||||| || |||||||| ||||||||  |||||||  |||||||||||||    
T  13230522 tgcattttttcattgttagatctca-caaaaagcgaaagtgaatgtattttaaataatagaggttgg 13230457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 13230668 - 13230621
Alignment:
Q  105 attgaaaatagagcgagttattggtaattttatggtttagttgaagga 152  Q
    ||||||||||| | |||||| |||||||||||||||||||||| ||||    
T  13230668 attgaaaatagtgtgagttactggtaattttatggtttagttgtagga 13230621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 43386037 - 43386095
Alignment:
Q  96 cgtggaaacattgaaaatagagcgagttattggtaattttatggtttagttgaaggagt 154  Q
    |||||||  |||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  43386037 cgtggaagtattgaaaatagatccagttattggtaattttatggtttagttgcaggagt 43386095  T

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Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 15632 - 15571
Alignment:
Q  246 ttttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaatagaggttg 307  Q
    ||||||||||||||||| |||||||||||||||||| ||| | |||||  ||||||||||||    
T  15632 ttttttcattgttagattccaccaaaaagcaaaagtcaaggtgttttaaataatagaggttg 15571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 32137 - 32245
Alignment:
Q  200 cacataattttaaagtgtcgctttgtcaactcagcaaaa-acctgcattttttcattgttagatcccaccaaaaagcaaaagtgaagatattttacgtaa 298  Q
    ||||||| |||||| ||||| || ||||||||   |||| || |||||||||||||||||| ||| ||||||||||| ||||||||  |||||||  |||    
T  32137 cacataaatttaaaatgtcgtttcgtcaactccttaaaacacatgcattttttcattgttatatctcaccaaaaagcgaaagtgaatgtatttta-ataa 32235  T
Q  299 tagaggttgg 308  Q
    ||||||||||    
T  32236 tagaggttgg 32245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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