View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_17 (Length: 394)
Name: NF7406_low_17
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 4905510 - 4905123
Alignment:
| Q |
1 |
gcaagagatagaaataaaggaaaacatgtattagatatgataaatagataatgtgataggaagagagatataaaaagaaaatgatgtggtaaatgagtgt |
100 |
Q |
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| T |
4905510 |
gcaagagatagaaataaaggaaaacatgtattagatatgataaatagatgatatgataggaagagagatataaaaagaaaatgatgtggtaaataagtgt |
4905411 |
T |
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| Q |
101 |
atgaaaattgaatatgtataaatataagagttctattataaatggatttcacacaaaattgtgagctccacataattttcatctataaaaaa-gtaaatg |
199 |
Q |
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| T |
4905410 |
atgaaaattgaatatgtataaatataagagttctattataaatggatttcacacaaaattgtgagctccacataattttcatctataaaaaaagtaaatg |
4905311 |
T |
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| Q |
200 |
ttagttcaatcattttggatatcatttaacatcatgtatattctataataaagcaatgtcttgatactataaagtaatctaaagagaaataagtattaat |
299 |
Q |
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| T |
4905310 |
ttagttcaatcattttggatatcatttaacatcatgtatattctataataaagcaatgtcttgatactataaagtaatctaaagagaaataagtattaat |
4905211 |
T |
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| Q |
300 |
tggagcaattgaagggatggtagtggagtataagcaaaaggtcaaatatgtttaattcaaatgcaaaaagtctagtggtttcatttca |
387 |
Q |
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| T |
4905210 |
tggagcaattgaagggatggtagtggagtataagcaaaaggtcaaatatgtttaattcaaatgcaaaaaatctagtggtttcatttca |
4905123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 7573649 - 7573588
Alignment:
| Q |
51 |
atgtgataggaagagagatataaaaagaaaatgatgtggtaaatgagtgtatgaaaattgaa |
112 |
Q |
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| T |
7573649 |
atgtgatgggaagaaagagatacaaagaaaatgaggtggttaatgggtgtatgaaaattgaa |
7573588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 29092180 - 29092104
Alignment:
| Q |
51 |
atgtgataggaagagagatataaaaagaaaatgatgtggtaaatgagtgtatgaaaattgaatatgtataaatataa |
127 |
Q |
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| T |
29092180 |
atgtgataggaagataaatatgaaaagaaaataatatgttaaatgagtgttggaaaattaaagatgtacaaatataa |
29092104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 31553416 - 31553472
Alignment:
| Q |
54 |
tgataggaagagagatataaaaagaaaatgatgtggtaaatgagtgtatgaaaattg |
110 |
Q |
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| T |
31553416 |
tgataggaataaagatataaaaagaaaatgagttgttaaatgagtgtacgagaattg |
31553472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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