View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7406_low_19 (Length: 383)
Name: NF7406_low_19
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 99 - 342
Target Start/End: Original strand, 14073750 - 14073993
Alignment:
| Q |
99 |
tttcattttattcacccgtaagggcatgtttgagcctgtgacaatcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatc |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073750 |
tttcattttattcacccgtaagagcatgtttgagcctgtgacagtcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatc |
14073849 |
T |
|
| Q |
199 |
caaatcagaggtagcagttgcatcagtggagaaaaacaccctgaagcctctaataaaggcctcgcgcgccgttgtctcacagcacaagttagtcatcaca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073850 |
caaatcagaggtagcagttgcatcagtggagaaaaacaccctgaagcctctaataaaggcctcgcgcgccgttgtctcacagcacaagttagtcatcaca |
14073949 |
T |
|
| Q |
299 |
cccgtcactataacctcgtccacacccatctctttcagcttctc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073950 |
cccgtcactataacctcgtccacacccatctctttcagcttctc |
14073993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 99 - 342
Target Start/End: Original strand, 14081226 - 14081469
Alignment:
| Q |
99 |
tttcattttattcacccgtaagggcatgtttgagcctgtgacaatcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatc |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14081226 |
tttcattttattcacccgtaagagcatgtttgagcctgtgacagtcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatc |
14081325 |
T |
|
| Q |
199 |
caaatcagaggtagcagttgcatcagtggagaaaaacaccctgaagcctctaataaaggcctcgcgcgccgttgtctcacagcacaagttagtcatcaca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14081326 |
caaatcagaggtagcagttgcatcagtggagaaaaacaccctgaagcctctaataaaggcctcgcgcgccgttgtttcacagcacaagttagtcatcaca |
14081425 |
T |
|
| Q |
299 |
cccgtcactataacctcgtccacacccatctctttcagcttctc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14081426 |
cccgtcactataacctcgtccacacccatctctttcagcttctc |
14081469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 125 - 295
Target Start/End: Original strand, 14104723 - 14104893
Alignment:
| Q |
125 |
tgtttgagcctgtgacaatcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatccaaatcagaggtagcagttgcatcag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14104723 |
tgtttgagcctgtgacaatcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatccaaatcagaggtagcacttgcatcag |
14104822 |
T |
|
| Q |
225 |
tggagaaaaacaccctgaagcctctaataaaggcctcgcgcgccgttgtctcacagcacaagttagtcatc |
295 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||| || | |||||||||| |
|
|
| T |
14104823 |
cggagaagaacaccctgaagcctctaataaaggtctcatgcgccgttgtctcacaacataggttagtcatc |
14104893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 261
Target Start/End: Original strand, 11837311 - 11837507
Alignment:
| Q |
66 |
aagttcacactcatatttataacaa-gttcagtttttcattttattcacccgtaagggcatgtttgagcctgtgacaatcaagaaagtaagcaaaaccat |
164 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| | ||||||||||||| | ||||||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11837311 |
aagttcacaatcaaatttataacaacgtttaaattttcattttatttaaggctaagggcttgtctgagcctgtgacaatcaagaaagtaaccaaaaccat |
11837410 |
T |
|
| Q |
165 |
aagccatgtttttcaatgtagcctcatgaagatccaaatcagaggtagcagttgcatcagtggagaaaaacaccctgaagcctctaataaaggcctc |
261 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||| | |||||| || | ||| |||| | |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11837411 |
aaaccatgtttttcaaagtagcctcatgaaaatctatatcagatgtggtagtggcattaccggagaagaacaccctgaagcctctcataaaggcctc |
11837507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 14112985 - 14113051
Alignment:
| Q |
142 |
atcaagaaagtaagcaaaaccataagccatgtttttcaatgtagcctcatgaagatccaaatcagag |
208 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14112985 |
atcaacaaattaagcaaaaccataagccaagtttttcaatgtagccttatgaagatccaaatcagag |
14113051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University