View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7406_low_20 (Length: 364)
Name: NF7406_low_20
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 39568459 - 39568110
Alignment:
| Q |
1 |
ttaatggatattcaattgatattttttgacaaaattataagggttgattctatatgactagagttttcttcggtgtccctcaataagaaatttaatgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39568459 |
ttaatggatattcaattgatattttttgacaaaattataagggttcattctatatgactagagttttcttcggtgtcactcaataagaaatttaatgatt |
39568360 |
T |
|
| Q |
101 |
accaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattcaataattcagaaaagtacatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39568359 |
accaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaagccattcaataattcagaaaagtacatgaa |
39568260 |
T |
|
| Q |
201 |
aacaacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatgaggtcaataggttgcataaccatgg |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39568259 |
aacgacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttctgatgaggtcaataggttgcataaccatgg |
39568160 |
T |
|
| Q |
301 |
agtgccaaaaaatgagaaaccagttagaccttgatgctggagttgctatat |
351 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39568159 |
-gtgcagaaaaatgagaaaccagttagaccttgatgctggagttgctatat |
39568110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 356
Target Start/End: Complemental strand, 39565640 - 39565366
Alignment:
| Q |
89 |
aatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaact-------gattaagccattcaata |
181 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||| |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
39565640 |
aatttaatgattaccaaa-atcagcttaataagaaatttaagtcacatcttctgtatgtcttattttgtaagaactaagaactgattaagccattcaata |
39565542 |
T |
|
| Q |
182 |
attcagaaaagtacatgaaaacaacataatctttaagcctctaagaacaactttgtttgttat--gaggaaaaaatttagaaacaaatttctgatgaggt |
279 |
Q |
| |
|
|||||||||| ||| ||||||||||||| | | ||| | ||| |||| ||| | ||||||||| | |||||||| |||||| ||||||||| ||||| |
|
|
| T |
39565541 |
attcagaaaaatacttgaaaacaacatagtttgtaaccatctgagaa-aacctagtttgttataaggggaaaaaaaatagaaatgaatttctgaagaggt |
39565443 |
T |
|
| Q |
280 |
caataggttgcataaccatggagtgccaaaaaatgagaaaccagttagaccttgatgctggagttgctatatattct |
356 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||| |||||| |||||| || ||||||||||| |||| |
|
|
| T |
39565442 |
aaataggttgcattaccaggaagtgccaaaaaatgagaaaccggttagatcttgatccttaagttgctatattttct |
39565366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University