View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_21 (Length: 362)
Name: NF7406_low_21
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 3228323 - 3228271
Alignment:
| Q |
308 |
atcatgaatcaacgacaaaaattagccaaatgcatgcatttaggaaagtaatc |
360 |
Q |
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| T |
3228323 |
atcatgaatcaacgacaaaaattagccaaatgcatgcatttaagaaagtaatc |
3228271 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 3338702 - 3338651
Alignment:
| Q |
308 |
atcatgaatcaacgacaaaaattagccaaatgcatgcatttaggaaagtaat |
359 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
3338702 |
atcatgaatcaacgaaaaaaaatagccaaatgcatgcatttaagaaagtaat |
3338651 |
T |
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