View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_low_22 (Length: 353)

Name: NF7406_low_22
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_low_22
NF7406_low_22
[»] chr2 (2 HSPs)
chr2 (1-230)||(28522527-28522750)
chr2 (172-218)||(25652981-25653027)
[»] chr8 (2 HSPs)
chr8 (12-218)||(18037009-18037215)
chr8 (45-91)||(24317143-24317189)
[»] chr3 (1 HSPs)
chr3 (45-112)||(13593794-13593861)
[»] chr1 (1 HSPs)
chr1 (105-223)||(20149914-20150032)
[»] chr4 (4 HSPs)
chr4 (107-221)||(19298946-19299059)
chr4 (292-353)||(20383909-20383967)
chr4 (10-57)||(19299060-19299107)
chr4 (192-230)||(10382638-10382676)
[»] chr7 (1 HSPs)
chr7 (56-229)||(10995545-10995718)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28522527 - 28522750
Alignment:
Q  1 tccatgggggcagcttcaccccctgcccaatgaatattttctaatggaatgtccgaggtgatctcatcccatatttatcgagagggtaacgtttgtgcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||| |||||||||||||||    
T  28522527 tccatgggggcagcttcaccccctgcccaatgaatattttctaatgg------cgaggtgatctcatcccatatttaccgagagagtaacgtttgtgcta 28522620  T
Q  101 acaagttggctaatatggggcatgcggttcatggggcggtttggttttcttctttaccggctgagttgagttctgatttccttcgggatatatgtggtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  28522621 acaagttggctaatatggggcatgcggttcatggggcggtttgattatctgctttaccgtctgagttgagttctgatttctttcgggatatatgtggtct 28522720  T
Q  201 tccaaactatagatttccctaatctgtggt 230  Q
    ||||||||| ||||||||||||||||||||    
T  28522721 tccaaactacagatttccctaatctgtggt 28522750  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 25652981 - 25653027
Alignment:
Q  172 tctgatttccttcgggatatatgtggtcttccaaactatagatttcc 218  Q
    ||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  25652981 tctgatttctttcgagatagatgtggtcttccaaactaaagatttcc 25653027  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 18037215 - 18037009
Alignment:
Q  12 agcttcaccccctgcccaatgaatattttctaatggaatgtccgaggtgatctcatcccatatttatcgagagggtaacgtttgtgctaacaagttggct 111  Q
    ||||||||| |||| ||||||||||| ||||  ||||||||| ||||||||||||||||||||||| || || ||||||||||||| | |||||||||||    
T  18037215 agcttcacctcctgtccaatgaatatattcttctggaatgtctgaggtgatctcatcccatatttaccgtgaaggtaacgtttgtgttgacaagttggct 18037116  T
Q  112 aatatggggcatgcggttcatggggcggtttggttttcttctttaccggctgagttgagttctgatttccttcgggatatatgtggtcttccaaactata 211  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| ||||||||||| ||||||| |||||||||||||||| | |||    
T  18037115 aatatggggcatgcggttcatggggcggtttggctatctgctttaccgtctgagttgggttctgatttctttcgggacatatgtggtcttccaatccata 18037016  T
Q  212 gatttcc 218  Q
    |||||||    
T  18037015 gatttcc 18037009  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 24317143 - 24317189
Alignment:
Q  45 tggaatgtccgaggtgatctcatcccatatttatcgagagggtaacg 91  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24317143 tggaatgtccgaggtgatctcatcccatatttaacgagaaggtaacg 24317189  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 13593794 - 13593861
Alignment:
Q  45 tggaatgtccgaggtgatctcatcccatatttatcgagagggtaacgtttgtgctaacaagttggcta 112  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  13593794 tggaatgtacgaggtgatctcatcccatatttatcgagaaggtaacgtttgtgctaacaggttggcta 13593861  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 20150032 - 20149914
Alignment:
Q  105 gttggctaatatggggcatgcggttcatggggcggtttggttttcttctttaccggctgagttgagttctgatttccttcgggatatatgtggtcttcca 204  Q
    |||||||||||||||| ||   |||||||||||||||||| | ||| ||| |||| |||||||| ||| ||||||  | | ||||| |||||||||||||    
T  20150032 gttggctaatatggggaattttgttcatggggcggtttggctatctgcttgaccgtctgagttgggttatgattttttccaggatagatgtggtcttcca 20149933  T
Q  205 aactatagatttccctaat 223  Q
    ||||| |||||||||||||    
T  20149932 aactacagatttccctaat 20149914  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 19299059 - 19298946
Alignment:
Q  107 tggctaatatggggcatgcggttcatggggcggtttggttttcttctttaccggctgagttgagttctgatttccttcgggatatatgtggtcttccaaa 206  Q
    |||||| |||||||||||| ||||| |||||  | ||| | ||| |||||||| |  ||||||||| | ||||| ||||||| |||||| ||||||||||    
T  19299059 tggctactatggggcatgccgttca-ggggctttctggctctctgctttaccgtcgaagttgagtttttatttctttcgggacatatgtagtcttccaaa 19298961  T
Q  207 ctatagatttcccta 221  Q
    ||| |||||||||||    
T  19298960 ctacagatttcccta 19298946  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 20383909 - 20383967
Alignment:
Q  292 tcttgtatgtacttttcccattatttttaatagaattttatttgagctttgcggcataggat 353  Q
    |||||||||||||||||||| ||||||||||| ||||||||   ||||| ||||||||||||    
T  20383909 tcttgtatgtacttttcccactatttttaataaaattttat---agcttggcggcataggat 20383967  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 19299107 - 19299060
Alignment:
Q  10 gcagcttcaccccctgcccaatgaatattttctaatggaatgtccgag 57  Q
    ||||||||||| ||| |||||||||||||||||  |||||||||||||    
T  19299107 gcagcttcacctcctacccaatgaatattttcttctggaatgtccgag 19299060  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 10382676 - 10382638
Alignment:
Q  192 atgtggtcttccaaactatagatttccctaatctgtggt 230  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  10382676 atgtggtcttccaaactacagatttccctaatccgtggt 10382638  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 10995545 - 10995718
Alignment:
Q  56 aggtgatctcatcccatatttatcgagagggtaacgtttgtgctaacaagttggctaatatggggcatgcggttcatggggcggtttggttttcttcttt 155  Q
    ||||||| || |||||||||||   ||||||||||||||||||| ||| |||||| |||||||| ||||  || ||  | | ||||||| | ||  ||||    
T  10995545 aggtgatttcttcccatatttaggaagagggtaacgtttgtgctgacaggttggcaaatatgggacatgtagtccagagagtggtttggatatccacttt 10995644  T
Q  156 accggctgagttgagttctgatttccttcgggatatatgtggtcttccaaactatagatttccctaatctgtgg 229  Q
    |||  |||| ||  | | |  |||| ||||| ||| |||||||||||||||||| | |||||||||||||||||    
T  10995645 accatctgatttaggctttcttttctttcggaatagatgtggtcttccaaactacaaatttccctaatctgtgg 10995718  T

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