View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_25 (Length: 327)
Name: NF7406_low_25
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 39909854 - 39910143
Alignment:
| Q |
20 |
aagtaaaatgttatggccaaaaaggcaaagcaacaacataaatcaaaatgcgatcctatctttctcttgaatttgatcttcaacactttccaatttgatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39909854 |
aagtaaaatgttatggccaaaaaggcaaagcaacaacataaatcaaaatgcgatcctatctttctcttgaatttgatcttcaacactttccaatttgatt |
39909953 |
T |
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| Q |
120 |
tgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgatggctctgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39909954 |
tgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgat-----tgt |
39910048 |
T |
|
| Q |
220 |
caccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagaaagttgagttggttttgaagcattggctttgctggtaccttc |
314 |
Q |
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| T |
39910049 |
caccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagaaagtttagttggttttgaagcgttggctttgctggtaccttc |
39910143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 39863103 - 39863296
Alignment:
| Q |
90 |
atttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctctt |
189 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |
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| T |
39863103 |
attttatcttcaacacttttcaatttgatttgatcattagcaaggcgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctctt |
39863202 |
T |
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| Q |
190 |
gatcttgaatcttaacgatgatggctctgtcaccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagaaagttgagttg |
283 |
Q |
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| T |
39863203 |
gatcttcaatctcatcaattttggctctgtcaccttgtagtttttcaagcttggctttaagatcagcaatttgagcatcaagagagttgcgttg |
39863296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 92 - 290
Target Start/End: Complemental strand, 38981039 - 38980838
Alignment:
| Q |
92 |
ttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttga |
191 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | |
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| T |
38981039 |
ttgatcttcaacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtttaaagatgcgatcttatctttctcttta |
38980940 |
T |
|
| Q |
192 |
tcttgaatcttaacgatgatggctctgtcaccttgtagtttttcaagcttggc---attaagatcagcaatctgagcatcaagaaagttgagttggtttt |
288 |
Q |
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| T |
38980939 |
tcttgaccctcagtaactttggccctctcaacttgtagtttttcaagcttggcattattaagatcagcaatctgagcatcaagaaagttgagttggtttt |
38980840 |
T |
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| Q |
289 |
ga |
290 |
Q |
| |
|
|| |
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|
| T |
38980839 |
ga |
38980838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 260
Target Start/End: Original strand, 39855904 - 39856074
Alignment:
| Q |
90 |
atttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctctt |
189 |
Q |
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|||| ||||||||| || | ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |
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| T |
39855904 |
attttatcttcaacgctcttcaacttgatttgatcatcagcgaggcgatggaaaattgatttaacttcattgttaaaagatgtgatcttatctttctctt |
39856003 |
T |
|
| Q |
190 |
gatcttgaatcttaacgatgatggctctgtcaccttgtagtttttcaagcttggcattaagatcagcaatc |
260 |
Q |
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| T |
39856004 |
gatcttgaatctcagccattttagcccggtcgccttgtagtttttcaagcttggctttgatatcagcaatc |
39856074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 39846210 - 39846378
Alignment:
| Q |
114 |
ttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgatgg |
213 |
Q |
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|||| ||||||| || ||||||||||||||||||||||||||||||||| | ||| | |||| || ||||||||||| ||| ||||| ||| || ||| |
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| T |
39846210 |
ttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttgg |
39846309 |
T |
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| Q |
214 |
ctctgtcaccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaagaaagttgagtt |
282 |
Q |
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|||| || |||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||| |
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| T |
39846310 |
ctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaagagagttgagtt |
39846378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 39738174 - 39738028
Alignment:
| Q |
88 |
gaatttgatcttc-aacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttct |
186 |
Q |
| |
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||||||||||||| |||||||| ||| ||||||||||||||| |||| | ||||||||||| ||||| ||||| |||||||||| ||| ||||||||| |
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| T |
39738174 |
gaatttgatcttccaacacttttcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatctttct |
39738075 |
T |
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| Q |
187 |
cttgatcttgaatcttaacgatgatggctctgtcaccttgtagtttt |
233 |
Q |
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||||||||||||||| | | || |||| ||||| ||||||||||| |
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| T |
39738074 |
cttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt |
39738028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 38980368 - 38980339
Alignment:
| Q |
288 |
tgaagcattggctttgctggtaccttcatc |
317 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38980368 |
tgaagcattggctttgctggtaccttcatc |
38980339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 53495721 - 53495633
Alignment:
| Q |
152 |
aacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgatggctctgtcaccttgtagtttttcaagct |
240 |
Q |
| |
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|||||||||||||||||||| |||| ||||||| ||||||||||||||| | | | |||| || |||||||||||||||||||||| |
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| T |
53495721 |
aacttctttgttcaaagatgtgatcttatctttttcttgatcttgaatcacagccagtttggccctttcaccttgtagtttttcaagct |
53495633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 14329334 - 14329415
Alignment:
| Q |
117 |
atttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctt-tctcttgatcttga |
197 |
Q |
| |
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|||||||||||| |||| |||| | ||||||||||||| | |||| ||||||| |||| |||||| |||||||||||||| |
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| T |
14329334 |
atttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga |
14329415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 14422344 - 14422425
Alignment:
| Q |
117 |
atttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctt-tctcttgatcttga |
197 |
Q |
| |
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|||||||||||| |||| |||| | ||||||||||||| | |||| ||||||| |||| |||||| |||||||||||||| |
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| T |
14422344 |
atttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga |
14422425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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