View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_28 (Length: 274)
Name: NF7406_low_28
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 39568448 - 39568707
Alignment:
| Q |
1 |
aatatccattaaaatgataagctaattagtgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39568448 |
aatatccattaaaatgataagctaattagtgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcg |
39568547 |
T |
|
| Q |
101 |
caaataaatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39568548 |
caaataaatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttctt |
39568647 |
T |
|
| Q |
201 |
ttccatctcagcaaccgaagtcactcttattttaatttccacttccacttctggtgttgg |
260 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39568648 |
ttccatctcagcaaccgaagccactcttattttaatttccacttccacttctggtgttgg |
39568707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 39561110 - 39561337
Alignment:
| Q |
33 |
tgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcaccaa |
132 |
Q |
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| T |
39561110 |
tgttagtacatatatgcattgcacggtcttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaa |
39561209 |
T |
|
| Q |
133 |
gcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagtcactcttattt |
232 |
Q |
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| T |
39561210 |
gcgtgatgatcatggccattcttgcatccacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagtcactcttattt |
39561309 |
T |
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| Q |
233 |
taatttccacttccacttctggtgttgg |
260 |
Q |
| |
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| T |
39561310 |
taatttccacttccacttctggtgttgg |
39561337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 39581996 - 39581767
Alignment:
| Q |
30 |
tgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcac |
129 |
Q |
| |
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|||||||||| ||||||| ||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
39581996 |
tgatgttagtgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcac |
39581897 |
T |
|
| Q |
130 |
caagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagtcactctta |
229 |
Q |
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|||||| ||| ||||| || |||||||||||||||||||||||||||||||| || |||||||| | | | |||||||||| ||| |||| ||| ||| |
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| T |
39581896 |
caagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagaaactgaagctactttta |
39581797 |
T |
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| Q |
230 |
ttttaatttccacttccacttctggtgttg |
259 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
39581796 |
ttttaatctccacttccacttctggtgttg |
39581767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 39571325 - 39571521
Alignment:
| Q |
61 |
ttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatc |
160 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| | ||||||| |||||| ||||| || ||||||||||| | ||||||||||||||||||||||| |
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| T |
39571325 |
ttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatttttgcatc |
39571424 |
T |
|
| Q |
161 |
cacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagtcactcttattttaatttccacttccacttctggtgt |
257 |
Q |
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|||||||||||||||||||||| || |||||||| | ||| ||||||||| |||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
39571425 |
cacactcattccaattattcaatctcctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgt |
39571521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 39585649 - 39585406
Alignment:
| Q |
17 |
ataagctaattagt-gatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaat |
115 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||| | ||||||| |||| |||||||||| |||||| |||| | ||||||| |||||||| |
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| T |
39585649 |
ataagctaattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaat |
39585550 |
T |
|
| Q |
116 |
cttcggcgctgcaccaagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccatctcagcaac |
215 |
Q |
| |
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|||| | | ||||||| || | ||||| |||||||||||||||||||||||||||||| |||||||| || | ||||| || || |||||||||||||| |
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| T |
39585549 |
cttcagtgttgcaccatgcttgatgattatgaccatttttgcatccacactcattccagttattcaatctccatttatttttgttctccatctcagcaac |
39585450 |
T |
|
| Q |
216 |
cgaagtcactcttattttaatttccacttccacttctggtgttg |
259 |
Q |
| |
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||||| ||| |||||||||| |||||||||||||||| ||||| |
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| T |
39585449 |
cgaaggaacttttattttaatctccacttccacttctgttgttg |
39585406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 39575457 - 39575217
Alignment:
| Q |
8 |
attaaaatgataagctaattagtgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataa |
107 |
Q |
| |
|
|||| |||||||||| | ||||| ||| |||| ||||||| ||||||||| | |||||||||||| |||||||||| |||||| |||| | ||||||| |
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| T |
39575457 |
attacaatgataagcaatttagttatggtagtgcatatatacatcacatatttttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatat |
39575358 |
T |
|
| Q |
108 |
atcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccatc |
207 |
Q |
| |
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|||||||||||| | | |||||||||| |||||||||||||||||| |||||||||| |||||||||||||| || |||||||| | ||| |||||| |
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| T |
39575357 |
atcacaatcttcagtgttgcaccaagctcgatgatcatgaccatttttacatccacacttgttccaattattcaatctcctcttattttgcttctccatc |
39575258 |
T |
|
| Q |
208 |
tcagcaaccgaagtcactcttattttaatttccacttccac |
248 |
Q |
| |
|
|| |||||||||| ||| |||||||||| ||||||||||| |
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| T |
39575257 |
tccgcaaccgaagctacttttattttaatctccacttccac |
39575217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 39565796 - 39566040
Alignment:
| Q |
8 |
attaaaatgataagctaattagt-gatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaata |
106 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| | ||||| | | |||| ||||||||||||| ||||||||||| ||||| |||| |||||||| |
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| T |
39565796 |
attataatgataagctaattagttgatgttagtgcctatatacgtagcataatcttgcatcaaaactaaaaagcctccaaagcg---ccaaacgcaaata |
39565892 |
T |
|
| Q |
107 |
aatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccat |
206 |
Q |
| |
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|||||| ||||| |||| |||||||||| ||| ||||| || |||||||||||||||||||||||||||||||| || || ||||| | ||| ||||| |
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|
| T |
39565893 |
tatcacactcttctgcgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctgttattttgcttctccat |
39565992 |
T |
|
| Q |
207 |
ctcagcaaccgaagtcactcttattttaatttccacttccacttctgg |
254 |
Q |
| |
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|||||||||||| | ||| |||||||||| ||||||||||||||||| |
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| T |
39565993 |
ctcagcaaccgaggctacttttattttaatctccacttccacttctgg |
39566040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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