View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_29 (Length: 267)
Name: NF7406_low_29
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 25357727 - 25357491
Alignment:
| Q |
14 |
gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt |
113 |
Q |
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| T |
25357727 |
gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt |
25357628 |
T |
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| Q |
114 |
aagggcgctgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaa |
213 |
Q |
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| T |
25357627 |
aaggacgttgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaggaatgttagagctgtttgttggttcaaccaaa |
25357528 |
T |
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| Q |
214 |
aatgtgcatacaatgtttttgcgagtacagcgaaaaa |
250 |
Q |
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| T |
25357527 |
aatgtgcatacaatgtttttgcaagtacagcgaaaaa |
25357491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 25353053 - 25352841
Alignment:
| Q |
14 |
gaagggtaagccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaattt |
113 |
Q |
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|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
25353053 |
gaagggtaagccaaaatatgataagttcaatgcaggagctgaaatcaccaaagacttcaaattcagtattggaatggagtttacttctcgacaccagttt |
25352954 |
T |
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| Q |
114 |
aagggcgctgttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaa |
213 |
Q |
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| T |
25352953 |
aaggacgttgttcgagagcacgatgtattaaatggcagaaaaataaaatttgccaagattgagaaaaggagggttaaagctgtttgtaagttcaaccaaa |
25352854 |
T |
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| Q |
214 |
aatgtgcatacaa |
226 |
Q |
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| T |
25352853 |
aatgtggatacaa |
25352841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 25362395 - 25362179
Alignment:
| Q |
24 |
ccaaaatatgataagttctatacagaagctgaaatcaccaaagacttcaaattcagtatcggaatggagtttacttctcgacaccaatttaagggcgctg |
123 |
Q |
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|||||||||||||||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | |||||||| | || |
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| T |
25362395 |
ccaaaatatgataagttcaatgtagaaacagaaatcaccaaagactttaaattcagtatcggaatggagttttcttctctacaactatttaaggatgttg |
25362296 |
T |
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| Q |
124 |
ttcgagagctcaatgtattaaatggcagaaaaataaaatttaccaggaatggcaaaaagaatgttagagctgtctgttggttcaaccaaaaatgtgcata |
223 |
Q |
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||| ||||| |||||| |||||| |||| | |||||||||||| ||| | |||| ||| ||||||||||| ||| ||| ||| ||||||||| ||| |
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| T |
25362295 |
ttcaagagcacaatgtgttaaataacagagagataaaatttaccgagaacgacaaatggaaggttagagctgtttgtaagtttaacaaaaaatgtggata |
25362196 |
T |
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| Q |
224 |
caatgtttttgcgagta |
240 |
Q |
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|| | |||||| ||||| |
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| T |
25362195 |
cactatttttgtgagta |
25362179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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