View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_30 (Length: 266)
Name: NF7406_low_30
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42928267 - 42928022
Alignment:
| Q |
1 |
tgggagcgtgtttcaactccgaagagcttcggcagtatgggattcaagaatctcaaagctttcaacattgctatgattggcaagcaagcttggaaattag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
42928267 |
tgggagcgtctttcaactccgaagagcttcggcagtatgggattcaagaatctcaaagctttaaacatggctatgattggcaagcaagcttggaaactag |
42928168 |
T |
|
| Q |
101 |
taacaagtccgaattctttaatcactaaattactcaaagctaaatattatccgagaagtgattatttcggtgcctctgtcttggtcataatccaagttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
42928167 |
taacaagtccgaattctttaatcactaaattactcaaagctaaatattatccgagaagtgattattttggtgcctctgtc--agtcataatccaagttac |
42928070 |
T |
|
| Q |
201 |
gtgtggtgaggcttgtggagggttaaagatatggtgcgtcgcagtttt |
248 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928069 |
gtgtggcgaggcttgtggagggttaaagatatggtgcgtcgcagtttt |
42928022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 12995983 - 12996023
Alignment:
| Q |
113 |
attctttaatcactaaattactcaaagctaaatattatccg |
153 |
Q |
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| T |
12995983 |
attctttgatcactaaattactcaaagctaaatattttccg |
12996023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 30470088 - 30470048
Alignment:
| Q |
113 |
attctttaatcactaaattactcaaagctaaatattatccg |
153 |
Q |
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| T |
30470088 |
attctttgatcactaaattactcaaagctaaatattttccg |
30470048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 16937275 - 16937242
Alignment:
| Q |
119 |
taatcactaaattactcaaagctaaatattatcc |
152 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
16937275 |
taatcactagattactcaaagctaaatattatcc |
16937242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 45275692 - 45275652
Alignment:
| Q |
113 |
attctttaatcactaaattactcaaagctaaatattatccg |
153 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
45275692 |
attctttgatcactaaattactcaaagctaaatattttccg |
45275652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 14584567 - 14584600
Alignment:
| Q |
119 |
taatcactaaattactcaaagctaaatattatcc |
152 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
14584567 |
taatcactagattactcaaagctaaatattatcc |
14584600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 22699005 - 22698970
Alignment:
| Q |
113 |
attctttaatcactaaattactcaaagctaaatatt |
148 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
22699005 |
attctttgatcactaaattactcaaagctaaatatt |
22698970 |
T |
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