View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_31 (Length: 256)
Name: NF7406_low_31
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 4362760 - 4362987
Alignment:
| Q |
18 |
aaatttcctccaattatcaccctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcactt |
117 |
Q |
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| T |
4362760 |
aaatttcctccaattatcaccctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcactt |
4362859 |
T |
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| Q |
118 |
gaatcatatctctccaaagcattctcaccagcaagttcaccacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4362860 |
gaatcatatctctccaaagcattctcaccagcaagttcaccacctgcaatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttg |
4362959 |
T |
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| Q |
218 |
catcacaaggttgttcattatccttcat |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4362960 |
catcacaaggttgttcattatccttcat |
4362987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 4370563 - 4370790
Alignment:
| Q |
18 |
aaatttcctccaattatcaccctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcactt |
117 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4370563 |
aaattgcctccaattttcaccctcaagcaacctcttatttattcttaaataagtaaaagcacttaatccacttgtagacaaaacttgaccataagcactt |
4370662 |
T |
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| Q |
118 |
gaatcatatctctccaaagcattctcaccagcaagttcaccacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttg |
217 |
Q |
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| T |
4370663 |
gaatcatatctctccaatgcattctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaatccttctggtgaacaattag |
4370762 |
T |
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| Q |
218 |
catcacaaggttgttcattatccttcat |
245 |
Q |
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| T |
4370763 |
catggccaggttgttcattatccttcat |
4370790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 41044224 - 41044156
Alignment:
| Q |
87 |
acttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttc |
155 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| || ||||||||||| |
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| T |
41044224 |
acttgttgacaaaacttgagcatatccacctgaatcatatctctccagtgcattttccccagcaagttc |
41044156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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