View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7406_low_38 (Length: 214)

Name: NF7406_low_38
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7406_low_38
NF7406_low_38
[»] chr6 (5 HSPs)
chr6 (19-196)||(6328748-6328925)
chr6 (53-196)||(6351291-6351434)
chr6 (53-196)||(6336306-6336449)
chr6 (19-55)||(6336466-6336502)
chr6 (19-55)||(6351451-6351487)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 6328925 - 6328748
Alignment:
Q  19 aagaagaaaaacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6328925 aagaagaaaaacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtt 6328826  T
Q  119 tcaaaaccaccacaaaaccattaaactcctcccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaac 196  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  6328825 tcaaaaccaccacaaaaccattaaactcctaccatccttcagccaccgccaccgtcgcctccattctcgaaagagaac 6328748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 6351434 - 6351291
Alignment:
Q  53 tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca 152  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6351434 tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca 6351335  T
Q  153 tccttcagccaccgccaccgtcgcttcccttctcgaaagagaac 196  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  6351334 tccttcggccaccgccgccgtcgcttcccttctcgaaagagaac 6351291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 6336449 - 6336306
Alignment:
Q  53 tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca 152  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6336449 tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca 6336350  T
Q  153 tccttcagccaccgccaccgtcgcttcccttctcgaaagagaac 196  Q
    |||||| ||||||||| |||||||||||||| | ||||||||||    
T  6336349 tccttcggccaccgccgccgtcgcttcccttattgaaagagaac 6336306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6336502 - 6336466
Alignment:
Q  19 aagaagaaaaacaacgtcaaagaaatcaaaaacatca 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  6336502 aagaagaaaaacaacgtcaaagaaatcaaaaacatca 6336466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6351487 - 6351451
Alignment:
Q  19 aagaagaaaaacaacgtcaaagaaatcaaaaacatca 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  6351487 aagaagaaaaacaacgtcaaagaaatcaaaaacatca 6351451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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