View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7406_low_4 (Length: 609)
Name: NF7406_low_4
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 593
Target Start/End: Original strand, 32974867 - 32975447
Alignment:
| Q |
14 |
catcagtgaatgttctgaagattcaagtgaggttatgagtgaagaatggtgaagagtgaagatcaagggttcgcacttcgcagtgagtgttctgaagctg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
32974867 |
catcagtgaatgttctgaagattcaagtgaggttctgagtgaagaatggtgaagtgtgaagatcaaggattcgcaattcgcagtgagtgttctgaagctg |
32974966 |
T |
|
| Q |
114 |
cgnnnnnnnnnnng-aagtacacgttcacatttttgaggtgttaatgtattttccttcttaatgtttattattatattattgatataaaaatataaagag |
212 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
32974967 |
cgtttttttttttttaagtacacgttcacgtttttgaggtgttaatgtattttccttcttaatgtttattattatattattaatataaaaatatagagag |
32975066 |
T |
|
| Q |
213 |
ggtctnnnnnnnntagagggaatctnnnnnnnttagagggagatttgggaggctatgaaatttttgactccacggtttgcaaaaactaacaaccaccatt |
312 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32975067 |
ggtctaaaaaaaatagagggaatctaaaaaaattagagggagatttgggaggctatgaaatttttgactccacggtttgcaaaaactaacaaccaccatt |
32975166 |
T |
|
| Q |
313 |
atttcaaagtggcttaaaatatttaaaatccatgggcaaatgaagtataggccatagtttactactcgcagcttattaaaaaagaaaaggtgatggattt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32975167 |
atttcaaagtggcttaaaatatttaaaatccatgggcaaatgaagtataggccatggtttactactcgcagcttattaaaaaagaaaaggtgatggattt |
32975266 |
T |
|
| Q |
413 |
tgattgagatttaaatatcaatgaataaaattcattgcctaataagaattggcaacgaccatgttaactccacacctacataagggtggcttaaaatgaa |
512 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32975267 |
tgattgagatttaaatatcaacgaataaaattcattgcctaataagaattggcaacgaccatgttaactccacacctacataagggtggcttaaaatgaa |
32975366 |
T |
|
| Q |
513 |
tagggaatgaannnnnnnagggtagtgaacgaaatatagaaacttgtcaatgagagaaaatccattacctatacacctatt |
593 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32975367 |
tagggaatgaatttttttagggtagtgaacgaaatatagaaacttgtcaatgagagaaaatccattacctatacacctatt |
32975447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University