View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_5 (Length: 556)
Name: NF7406_low_5
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 545
Target Start/End: Complemental strand, 48067951 - 48067420
Alignment:
| Q |
15 |
agatatacctctccagttacccttcccaagcttctcaagtcctctaagaaatatcatgtgctcctcctcggtccacggcatacctgatcacnnnnnnn-t |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48067951 |
agatatacctctccagttacccttcccaagcttctcaagtcctctaagaaatatcatgtgctcctcctcggtccacggcatacctgatcacaaaaaaaat |
48067852 |
T |
|
| Q |
114 |
gtacattatgttaatttcttttccaagcaacaattcacagttctagagtatatcaaatgttaaatcataattagttgaaatttccatgcttaattttctc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48067851 |
gtacattatgttaatttcttttccaagcaacaattcacagttctagagtatatcaaatgttaaatcataattagttgaaatgtccatgcttaattttctc |
48067752 |
T |
|
| Q |
214 |
attagctggagtattcacttggccggattttgaacatgagacaatagtataattataaccttttttactgggtctaattgttgatgtgtgccagtttctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48067751 |
attagctggagtattcacttggccggattttgaacatgagacaatagtataattataaccttttttactgggtctaattgttgatgtgtgccagtttctt |
48067652 |
T |
|
| Q |
314 |
acgcaactatctgaattttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggaaggtagttctttctgatac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48067651 |
acgcaactatctgaattttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggcaggtagttctttctgatac |
48067552 |
T |
|
| Q |
414 |
tcctttttgttggcaaatatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaagtttccaca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48067551 |
tcctttttgttggcaaatatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaagtttccaca |
48067452 |
T |
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| Q |
514 |
atatgagcatttcctacctattctcatttctt |
545 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
48067451 |
atatgagcatttcctagctattctcatttctt |
48067420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 45096390 - 45096460
Alignment:
| Q |
15 |
agatatacctctccagttaccc-ttcccaagcttctcaagtcctctaagaa--atatcatgtgctcctcct |
82 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||| |||||| ||| ||||| |||||||||||| |
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| T |
45096390 |
agatatacctctccagttaccctttcccaagcatttcaagccctctatgaattatatcctgtgctcctcct |
45096460 |
T |
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