View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_6 (Length: 552)
Name: NF7406_low_6
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Original strand, 32974928 - 32975447
Alignment:
| Q |
18 |
atcaagggttcgcacttcgcagtgagtgttctgaagctgcgnnnnnnnnnnng-aagtacacgttcacatttttgaggtgttaatgtattttccttctta |
116 |
Q |
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| T |
32974928 |
atcaaggattcgcaattcgcagtgagtgttctgaagctgcgtttttttttttttaagtacacgttcacgtttttgaggtgttaatgtattttccttctta |
32975027 |
T |
|
| Q |
117 |
atgtttattattatattattgatataaaaatataaagagggtctnnnnnnnntagagggaatctnnnnnnnttagagggagatttgggaggctatgaaat |
216 |
Q |
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| T |
32975028 |
atgtttattattatattattaatataaaaatatagagagggtctaaaaaaaatagagggaatctaaaaaaattagagggagatttgggaggctatgaaat |
32975127 |
T |
|
| Q |
217 |
ttttgactccacggtttgcaaaaactaacaaccaccattatttcaaagtggcttaaaatatttaaaatccatgggcaaatgaagtataggccatagttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32975128 |
ttttgactccacggtttgcaaaaactaacaaccaccattatttcaaagtggcttaaaatatttaaaatccatgggcaaatgaagtataggccatggttta |
32975227 |
T |
|
| Q |
317 |
ctactcgcagcttattaaaaaagaaaaggtgatggattttgattgagatttaaatatcaatgaataaaattcattgcctaataagaattggcaacgacca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32975228 |
ctactcgcagcttattaaaaaagaaaaggtgatggattttgattgagatttaaatatcaacgaataaaattcattgcctaataagaattggcaacgacca |
32975327 |
T |
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| Q |
417 |
tgttaactccacacctacataagggtggcttaaaatgaatagggaatgaannnnnnnagggtagtgaacgaaatatagaaacttgtcaatgagagaaaat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32975328 |
tgttaactccacacctacataagggtggcttaaaatgaatagggaatgaatttttttagggtagtgaacgaaatatagaaacttgtcaatgagagaaaat |
32975427 |
T |
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| Q |
517 |
ccattacctatacacctatt |
536 |
Q |
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|||||||||||||||||||| |
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| T |
32975428 |
ccattacctatacacctatt |
32975447 |
T |
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