View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7406_low_8 (Length: 544)
Name: NF7406_low_8
Description: NF7406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7406_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 40762724 - 40763225
Alignment:
| Q |
12 |
gaacctgtgccggtaaccttcaagttatcgtggaagcttcacttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatct |
111 |
Q |
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| T |
40762724 |
gaacctgcgccggtaaccttcaagttatcgtggaagcttcgcttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatct |
40762823 |
T |
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| Q |
112 |
aaaacttcctccttctggtgagaaacagaaaaagaagatcgagcttcgcgctgataaggttcttcatgttggtcatgttgatcctgctaaatatcctttg |
211 |
Q |
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| T |
40762824 |
caaacttcctccttctggtgagaaacagaataagaagatcgagcttcgcgctgataaggttcttcatgttggtcctgttgatcctgctaaatatcctttg |
40762923 |
T |
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| Q |
212 |
cctaaattgagactcactcctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatat |
311 |
Q |
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| T |
40762924 |
cctaaattaagactcactcctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatat |
40763023 |
T |
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| Q |
312 |
gcaggagtatttaaattactatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtatgnnnnnnnngttagtaatttcatgg-acca |
410 |
Q |
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| T |
40763024 |
gcaggagtatttaaattactatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtat---------gtt-----ttttttggtacca |
40763109 |
T |
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| Q |
411 |
aactaataaacggaaaacatatttgactttgagtgtgccaaaaccgaatgtcacttttatccgcctattttaatcaatataccgatagaacaacagaatt |
510 |
Q |
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| T |
40763110 |
aactaataaacggaaaacatatttgactttgagtgtgtcaaaaccgaatgtcacttttatccgcctattttaatcaatatactgatagaacaacagaatt |
40763209 |
T |
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| Q |
511 |
aagatacatctttatt |
526 |
Q |
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| T |
40763210 |
aagatacatctttatt |
40763225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 42910157 - 42910424
Alignment:
| Q |
20 |
gccggtaaccttcaagttatcgtggaagcttcacttgctgatcttggacaacttgttcttactggaacttgtgttgttgttgatggatatctaaaacttc |
119 |
Q |
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| T |
42910157 |
gccggtaaccttcaagttatcatcgacgcttcgcttgctgatcttggacaacttgttcagactggaacttgtgttgttgttgagggacatctcaaacttc |
42910256 |
T |
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| Q |
120 |
ctccttctggtgagaaacagaaaaagaagatcgagcttcgcgctgataaggttcttcatgttggtcatgttgatcctgctaaatatcctttgcctaaatt |
219 |
Q |
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| T |
42910257 |
ctccttctggagcgaaac------agaagatcgagcttcgtgctgaagaggttcttcatgttggtcctgttgatcctgctaaatatcctttgcctaaaac |
42910350 |
T |
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| Q |
220 |
gagactcactcctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttat |
305 |
Q |
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| T |
42910351 |
gagactcac------------tcttgaatccttgcgtgattttgttcaccttcgttcaagaaccaacacggtgcgtttctttttat |
42910424 |
T |
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