View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7407_high_1 (Length: 443)
Name: NF7407_high_1
Description: NF7407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7407_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 5127331 - 5127112
Alignment:
| Q |
211 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
310 |
Q |
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| T |
5127331 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
5127232 |
T |
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| Q |
311 |
gacatgaagnnnnnnngactggtgtgagcttgttgacaaattatagttctgaggttgagttgaacggcgatggaatgcgacatagactcaactaaaaaag |
410 |
Q |
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| T |
5127231 |
gatatgaagtttttttgactggtgtgagcttgctgacaaattatagttctgaggttgagttgaacggcgatggaatgcgacatagactcaactaaaaaag |
5127132 |
T |
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| Q |
411 |
atggaaatgatgaagttgat |
430 |
Q |
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| T |
5127131 |
atggaaatgatgaagttgat |
5127112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 5127489 - 5127348
Alignment:
| Q |
84 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
183 |
Q |
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| T |
5127489 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
5127390 |
T |
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| Q |
184 |
agttgaagttaaggagaacaagattgcagtatattgacatat |
225 |
Q |
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| T |
5127389 |
tgttgaagttaaggagaataagattgcagtatattgacatat |
5127348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 5128375 - 5128314
Alignment:
| Q |
18 |
aaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
79 |
Q |
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| T |
5128375 |
aaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
5128314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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