View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_high_1 (Length: 496)
Name: NF7408_high_1
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 31898686 - 31898413
Alignment:
| Q |
19 |
catagtcaaccgttgatattgtccaaaactcataaaacagttgttgttttcaaatataaaacaatttgtataaataaaattaaagatgttaannnnnnna |
118 |
Q |
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| T |
31898686 |
catagtcaaccgttgatattgtccaaaactcataaaacagttgttgtattcaaatataaaacaatttgtataaataaaa-----gatgttaattttttta |
31898592 |
T |
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| Q |
119 |
gcaaactgagttggtattatgataaagatggatttaggtacatatcattcagcttaaattgtgcgctaatatacatctacgcattgagaactacttgtta |
218 |
Q |
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| T |
31898591 |
gcaaactgagttagtattatgataaagatggatttaggtacatatcattcagcttaaattgtgcgctaatatacatctacgcattgaga---acttgtta |
31898495 |
T |
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| Q |
219 |
atcataaacacttttggatcaaaaagtctgctaattacatttaaagaaaattaagctattgcaattactcttaagattcttc |
300 |
Q |
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| T |
31898494 |
atcacaaacacttttggatcaaaaagtctgctaattacatttaaagaaaattatgctattgcaattactcttaagattcttc |
31898413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 496
Target Start/End: Complemental strand, 31898333 - 31898232
Alignment:
| Q |
395 |
tggtgacttcacactttgacttgtcggatccttcttcctctggaggattttatgccttagcaatgaaggagccttaccagcatcagacaccgctcaccat |
494 |
Q |
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| T |
31898333 |
tggtgacttcacactttgacttgtcggatccttcttcctccggaggattttatgccttagcaatgaaggagccttatcagcatcagacaccgctcaccat |
31898234 |
T |
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| Q |
495 |
tc |
496 |
Q |
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|| |
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| T |
31898233 |
tc |
31898232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 31864278 - 31864111
Alignment:
| Q |
118 |
agcaaactgagttggtattatgataaagatggatttaggtacatatcattcagcttaaattgtgcgctaatatacatctacgcattgagaactacttgtt |
217 |
Q |
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| T |
31864278 |
agcaaactgagttagtgttaatataaatatggatttaggtacatatcattaagctcaaattgtgggctaatatacatctaagcattgagaactacttgtt |
31864179 |
T |
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| Q |
218 |
aatcataaacacttttggatcaaaaagtctgctaattacatttaaagaaaattaagctattgcaatta |
285 |
Q |
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| T |
31864178 |
aatcacaaactcttgtagataaaaagttctccaaattacatttaaagaaactaattctattgcaatta |
31864111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 171 - 288
Target Start/End: Complemental strand, 31930598 - 31930480
Alignment:
| Q |
171 |
cttaaattgtgcgctaatatacatctacgcattgagaactacttgttaatcataaacacttttggatca-aaaagtctgctaattacatttaaagaaaat |
269 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| || ||||||| |||||||| | |||||||||||||||| || |
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| T |
31930598 |
cttaaattgtgtactaatatacatctaagcattgagaactacttgttaatcacaaacatttgtggatcaaaaaagtctccgaattacatttaaagaagat |
31930499 |
T |
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| Q |
270 |
taagctattgcaattactc |
288 |
Q |
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| T |
31930498 |
tattctattgtaattactc |
31930480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 31930324 - 31930226
Alignment:
| Q |
397 |
gtgacttcacactttgacttgtcggatccttcttcctctggaggattttatgccttagcaatgaaggagccttaccagcatcagacaccgctcaccatt |
495 |
Q |
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|||| |||| || |||| |||||||||||||||||| |||||||||| |||| || |||| ||||||||||| || ||||| ||| ||||||||||| |
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| T |
31930324 |
gtgatttcatacattgatttgtcggatccttcttccactggaggattgaatgcgttggcaacaaaggagccttatcaacatcatacatcgctcaccatt |
31930226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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