View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_high_17 (Length: 219)

Name: NF7408_high_17
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_high_17
NF7408_high_17
[»] chr3 (2 HSPs)
chr3 (1-196)||(4140685-4140880)
chr3 (20-85)||(4129095-4129160)
[»] chr1 (1 HSPs)
chr1 (28-85)||(13932522-13932579)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4140880 - 4140685
Alignment:
Q  1 ccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4140880 ccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgc 4140781  T
Q  101 aagaatagaaacacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtacc 196  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4140780 aagaatagaaatacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtacc 4140685  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4129160 - 4129095
Alignment:
Q  20 tcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata 85  Q
    |||||||||||||||||||||| |||||| || |||||||||||||| ||||||||| | ||||||    
T  4129160 tcaccagaaacaatcttttccatcaacacttccaaagaagctgcaagaagtgcttctcccacaata 4129095  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 13932579 - 13932522
Alignment:
Q  28 aacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata 85  Q
    |||||| |||| |||||||| ||| |||||||||| ||| ||||||||||| ||||||    
T  13932579 aacaatttttttcaacaacagctccaaagaagctgaaagaagtgcttctaccacaata 13932522  T

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