View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_high_3 (Length: 462)
Name: NF7408_high_3
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 229 - 455
Target Start/End: Complemental strand, 25337567 - 25337341
Alignment:
| Q |
229 |
tcactgatgaataagaattcctaatgaaccagtccattggtgaatcaccactttaaccttcnnnnnnnaatatgaatccagagcaatatatcagttcaga |
328 |
Q |
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| T |
25337567 |
tcactgatgaataagaattcctaatgaaccactccattggtgcatcaccactcgaaccttctttttttaatatgaatccagagcaatatatcagttcaga |
25337468 |
T |
|
| Q |
329 |
atacctggcttttctttccattattgttgtacaaatgttagtaattgttggtactatattgaaaatggggatcaaactctgatctctttgtcactccact |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25337467 |
atacctggcttttctttccattattgttgtacaaatgttagtaattgttagtactatattgaaaatggggatcaaactctgatctctttgtcactacact |
25337368 |
T |
|
| Q |
429 |
ccttaactattccacctcaaccaccaa |
455 |
Q |
| |
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||||||| |||||||||||||||||| |
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|
| T |
25337367 |
tcttaactcttccacctcaaccaccaa |
25337341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 25337751 - 25337695
Alignment:
| Q |
62 |
tagacaattataaagtaccaagcctagcaattaatttcttcattctttacatgtact |
118 |
Q |
| |
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|||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
25337751 |
tagacaattataaattactaggcctagcaattaatctcttcattctttacatgtact |
25337695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 7138137 - 7138102
Alignment:
| Q |
229 |
tcactgatgaataagaattcctaatgaaccagtcca |
264 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
7138137 |
tcactgatgaataagaattcctaatgaaccactcca |
7138102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 4470427 - 4470392
Alignment:
| Q |
229 |
tcactgatgaataagaattcctaatgaaccagtcca |
264 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
4470427 |
tcactgatgaataagaattcctaatgaaccactcca |
4470392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 26556147 - 26556112
Alignment:
| Q |
229 |
tcactgatgaataagaattcctaatgaaccagtcca |
264 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
26556147 |
tcactgatgaataagaattcctaatgaaccactcca |
26556112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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