View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_high_4 (Length: 389)

Name: NF7408_high_4
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_high_4
NF7408_high_4
[»] chr1 (3 HSPs)
chr1 (19-172)||(27878653-27878805)
chr1 (237-302)||(27878870-27878935)
chr1 (339-373)||(27878973-27879007)
[»] chr4 (2 HSPs)
chr4 (19-172)||(5986455-5986608)
chr4 (240-298)||(5986661-5986719)
[»] chr7 (3 HSPs)
chr7 (19-87)||(24756827-24756895)
chr7 (23-68)||(34231081-34231126)
chr7 (100-172)||(34226981-34227053)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 27878653 - 27878805
Alignment:
Q  19 tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878653 tggcacataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa 27878752  T
Q  119 atcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc 172  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  27878753 atcatttgttcaa-cttcgtttccatcgtgattacctctttatctctgaaaccc 27878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 27878870 - 27878935
Alignment:
Q  237 tttataccctttataaacaaagatacgatatacttacatcttgacatgtattttaaatatcaacat 302  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27878870 tttataccctttataaacaaagatacaatatacttacatcttgacatgtattttaaatatcaacat 27878935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 27878973 - 27879007
Alignment:
Q  339 ttcccgtgcaggccacgggctgcaaactagtatat 373  Q
    |||||||||||||||||||||||||||||||||||    
T  27878973 ttcccgtgcaggccacgggctgcaaactagtatat 27879007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 5986455 - 5986608
Alignment:
Q  19 tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa 118  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  5986455 tggcaaataggatcaaaagatgtcattaaaatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggagtatttggtaaagaccgcaaa 5986554  T
Q  119 atcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc 172  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||    
T  5986555 atcatttgttcaactttcatttccatcgtgattacctctttatctctaaaaccc 5986608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 5986661 - 5986719
Alignment:
Q  240 ataccctttataaacaaagatacgatatacttacatcttgacatgtattttaaatatca 298  Q
    |||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||    
T  5986661 ataccctttataaataaagatatgatatatttacattttgacatgtattttaaatatca 5986719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 24756895 - 24756827
Alignment:
Q  19 tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcga 87  Q
    ||||||||||||| |||||| |||||||| ||  | ||||||||||| |||||||||||||||| ||||    
T  24756895 tggcaaataagatgaaaagacgtcattaaaatgataaaatagtttaaataatgttataaaaataatcga 24756827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 34231081 - 34231126
Alignment:
Q  23 aaataagatcaaaagatgtcattaatatagttaaatagtttaagta 68  Q
    |||||||||||||| |||||||||| ||| | ||||||||||||||    
T  34231081 aaataagatcaaaatatgtcattaaaataataaaatagtttaagta 34231126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 34226981 - 34227053
Alignment:
Q  100 atttggtaaagaccgcaaaatcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc 172  Q
    |||||||||||||||||||||| |||||| || |||| || ||||| || |||  ||||| ||||| ||||||    
T  34226981 atttggtaaagaccgcaaaatcgtttgtttaactttcattgccatcatgcttacatctttttctctaaaaccc 34227053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University