View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_11 (Length: 321)
Name: NF7408_low_11
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6036267 - 6035960
Alignment:
| Q |
1 |
aaccatatttgagagttttattgagatgcaacttccaacttctcagtattctatttatacattttaaattgagatgcagtaactatcatgaacactaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6036267 |
aaccatatttgagagttttattgagatgcaacttccaacttctcagtattctatttttacattttaaattgagatgcagtaactatcatgaacactaacc |
6036168 |
T |
|
| Q |
101 |
gaccctcactaaatactaaataactaactgattttcgtctggtcctctgacagaatcaacatcctctaataaaaacgaatggctgagatgatctttaatg |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
6036167 |
gaccctcactaaatactaaataactaactaattttcgtctggtgctctgacagaatcaacatcctctaataaaaacgaacggttgagatgatctttaatg |
6036068 |
T |
|
| Q |
201 |
ttagacattccatactcgatatactcgtttgcatttctaccaacaacatctaccaattataagtttcaatatgccggaaacaaaatgctttctatctaaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6036067 |
ttagacattccatactcgatatactcgtttgcatttctaccaacaacatctaccaattataagtttcaatatgccggaaacaaaatgctttctatctaaa |
6035968 |
T |
|
| Q |
301 |
ttattatt |
308 |
Q |
| |
|
|||||||| |
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|
| T |
6035967 |
ttattatt |
6035960 |
T |
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