View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_low_13 (Length: 311)

Name: NF7408_low_13
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_low_13
NF7408_low_13
[»] chr7 (10 HSPs)
chr7 (16-295)||(39621582-39621861)
chr7 (87-285)||(39588786-39588984)
chr7 (90-291)||(39537611-39537812)
chr7 (88-291)||(39339044-39339247)
chr7 (90-291)||(39547076-39547277)
chr7 (90-285)||(1084413-1084608)
chr7 (79-252)||(39574311-39574483)
chr7 (88-252)||(39366506-39366670)
chr7 (90-291)||(39563707-39563908)
chr7 (88-291)||(39353887-39354090)
[»] chr8 (1 HSPs)
chr8 (182-287)||(4501668-4501773)
[»] chr2 (2 HSPs)
chr2 (92-285)||(44210553-44210746)
chr2 (182-252)||(43457013-43457083)
[»] chr4 (3 HSPs)
chr4 (92-282)||(2877871-2878061)
chr4 (92-276)||(2887400-2887584)
chr4 (92-276)||(2896770-2896954)
[»] chr5 (1 HSPs)
chr5 (95-157)||(29777524-29777586)
[»] chr1 (1 HSPs)
chr1 (92-252)||(41687151-41687311)
[»] chr3 (1 HSPs)
chr3 (92-157)||(25522821-25522886)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 39621582 - 39621861
Alignment:
Q  16 ataatgatcagagcttgctaatataagaaaatgaactaaaaataaaatttaaatataggtttactctttttatttcacctcatcaaaagattcaaatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621582 ataatgatcagagcttgctaatataagaaaatgaactaaaaataaaatttaaatataggtttactctttttatttcacctcatcaaaagattcaaatata 39621681  T
Q  116 tcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaatagcgacagatcttgcatctagcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621682 tcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaatagcgacagatcttgcatctagcc 39621781  T
Q  216 ctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621782 ctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgctgtagt 39621861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 285
Target Start/End: Original strand, 39588786 - 39588984
Alignment:
Q  87 atttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcat 186  Q
    |||| ||||| ||||||||||||||||||| |||  | |  |||||||||| ||| ||||  ||||||||  | |||||||| |||||||  ||||||||    
T  39588786 attttacctcgtcaaaagattcaaatatatgaatgctgggctgatgaatggtacaaacaattgttcttcctgtgtccactatgtttctaactgctctcat 39588885  T
Q  187 aacaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttt 285  Q
    ||||||||   |||  |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||  |||||||||||    
T  39588886 aacaatagatgcagcccttgcatctagccccgaagttggctcatccatgaatattatagaaggattagccactaactcaactgcaactgtcaacctttt 39588984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 39537611 - 39537812
Alignment:
Q  90 tcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataac 189  Q
    |||||||||||||||||||||||||||||||  | | ||| ||||||| ||| ||||| ||||||||| | || ||| | || ||||  | |||||||||    
T  39537611 tcacctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataac 39537710  T
Q  190 aatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgc 289  Q
    ||||||  |||  |||||||| || || |||||||||||||||||||| ||||| |||||||| || || ||||| || |||||||||| |||||| |||    
T  39537711 aatagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgc 39537810  T
Q  290 tg 291  Q
    ||    
T  39537811 tg 39537812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 39339247 - 39339044
Alignment:
Q  88 tttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcata 187  Q
    |||||||||||||||||||||||||||||||||  | |  || || || | ||| ||||| ||||||||| | || ||| | || ||||  | |||||||    
T  39339247 tttcacctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcata 39339148  T
Q  188 acaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttc 287  Q
    ||||||||  |||  |||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || |||| ||||| |||||| |    
T  39339147 acaatagctgcagcccttgcatctagcccagaagttggctcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgc 39339048  T
Q  288 gctg 291  Q
    ||||    
T  39339047 gctg 39339044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 39547076 - 39547277
Alignment:
Q  90 tcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataac 189  Q
    |||||||||||||||||||||||||||||||  | |  || || |||| ||| ||||| ||||||||  | || ||| | || ||||  | |||||||||    
T  39547076 tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcataac 39547175  T
Q  190 aatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgc 289  Q
    ||||||  ||| ||||||||| || || |||||||||||||||||||| ||||| |||||||| || || ||||| || |||||||||| |||||| |||    
T  39547176 aatagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgc 39547275  T
Q  290 tg 291  Q
    ||    
T  39547276 tg 39547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 1084413 - 1084608
Alignment:
Q  90 tcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataac 189  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||  || ||||||||||||||| | || ||| |  | ||||  | |||||||||    
T  1084413 tcacctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttccagtgtctactgtgctcctaactgttctcataac 1084512  T
Q  190 aatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttt 285  Q
    ||| ||  | |   ||||||||||||| ||||||||||||||||| || ||||| |||||||| |  || ||||| || |||||||||| ||||||    
T  1084513 aatcgctgctgccattgcatctagcccagaagttggctcatccataaatattatagaaggattagaaaccaactcaactgcaatagtcagcctttt 1084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 39574311 - 39574483
Alignment:
Q  79 ctctttttatttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatg 178  Q
    |||||||| ||| |||||||| ||||||||||| ||||||||  | |  || ||||||| ||| ||||  ||||||||| | |||||||| || ||||      
T  39574311 ctctttttgttt-acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccagtgtccactatgttcctaact 39574409  T
Q  179 gctctcataacaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatt 252  Q
    |||||||||||||||||  ||| ||||||||||| ||| |||||||||||||||||||| || || ||||||||    
T  39574410 gctctcataacaatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatt 39574483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 39366670 - 39366506
Alignment:
Q  88 tttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcata 187  Q
    |||||||||||||||||||||||||||||||||  | |  || || |||| ||| ||||||||||||||  | || ||| | || ||||  ||||||||     
T  39366670 tttcacctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttccggtgtcaactgtgttcctaactgctctcatc 39366571  T
Q  188 acaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatt 252  Q
    || |||||  |||  || ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  39366570 actatagctgcagccctcgcatctagcccagaagttggctcatccatgaatattattgaaggatt 39366506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 39563707 - 39563908
Alignment:
Q  90 tcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataac 189  Q
    |||||||||||||||||||||||||||||||  | |  || || || | ||| ||||| ||||||||| | |  ||| | || ||||  | |||||| ||    
T  39563707 tcacctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcac 39563806  T
Q  190 aatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttcgc 289  Q
    ||||||  |||  |||||||||||||| |||||||| ||||||||||| |||||||||||||| || || ||||| || ||||| ||||||| ||| |||    
T  39563807 aatagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaaccgtttgcgc 39563906  T
Q  290 tg 291  Q
    ||    
T  39563907 tg 39563908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 39354090 - 39353887
Alignment:
Q  88 tttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcata 187  Q
    |||||||||||||||||||||||||||||||||  | |  || || || | ||| ||||| ||||||||  | || ||| | |||||||  | ||||||     
T  39354090 tttcacctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctgtatctactgtgtttctaactgttctcatc 39353991  T
Q  188 acaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttttc 287  Q
    ||||  ||  |||  |||||||||||||| |||||||| ||||||||||| |||||||||||||| || || ||||| || |||| ||||| |||||| |    
T  39353990 acaactgctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgc 39353891  T
Q  288 gctg 291  Q
    ||||    
T  39353890 gctg 39353887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 4501773 - 4501668
Alignment:
Q  182 ctcataacaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacc 281  Q
    ||||||||||||||  | | |||||||||||| || |||||||||||||||||||| || ||||||||||| || || | |||||||||||| |||| ||    
T  4501773 ctcataacaatagcagctgctcttgcatctagaccagaagttggctcatccatgaatatgattgaaggattagcaacaagctcgaccgcaattgtcagcc 4501674  T
Q  282 tttttc 287  Q
    | ||||    
T  4501673 tctttc 4501668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 285
Target Start/End: Original strand, 44210553 - 44210746
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaa 191  Q
    ||||||||||| | ||||||||| |||||  | | |||||| |||| ||| ||||| ||||||||  | |||||| | || || |  | |||||||||||    
T  44210553 acctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 44210652  T
Q  192 tagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacctttt 285  Q
    | ||  ||| ||| |||||||  || |||||||| ||||||||||| ||||| || ||||| |||||||  || || |||||||||||||||||    
T  44210653 ttgcagcagctctagcatctaaaccagaagttggttcatccatgaaaattatggacggattagccactagttcaactgcaatagtcaacctttt 44210746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 43457013 - 43457083
Alignment:
Q  182 ctcataacaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatt 252  Q
    ||||||||||| ||  ||| ||||||||| || ||||||||||| ||||||||||| || |||||||||||    
T  43457013 ctcataacaattgctgcagctcttgcatcaagacctgaagttggttcatccatgaaaatgattgaaggatt 43457083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 2878061 - 2877871
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaa 191  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| ||| ||||| ||||||||  | || ||  | || |||| || || ||||||||    
T  2878061 acctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa 2877962  T
Q  192 tagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagtcaacct 282  Q
    | ||  ||| ||| |||||||  || || || ||||| |||||||| ||||| || ||||| |||||||| || || | |||||| |||||    
T  2877961 ttgcagcagctctagcatctaatccagatgtaggctcgtccatgaaaattatggatggattggccactaattcaactgaaatagttaacct 2877871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 2887584 - 2887400
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaa 191  Q
    ||||||||||||| ||| ||||| |||||| ||| |||||||||||  || ||||| ||||||||  | || ||  | || |||| || || ||||||||    
T  2887584 acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa 2887485  T
Q  192 tagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagt 276  Q
    | ||  ||| ||| |||||||  || || || |||||||||||||| ||||| || ||||| |||||||| || || ||||||||    
T  2887484 ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaatagt 2887400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 276
Target Start/End: Original strand, 2896770 - 2896954
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaa 191  Q
    ||||||||||||| ||| ||||| |||||| ||| |||||||||||  || ||||| ||||||||  | || ||  | || ||||  | || ||||||||    
T  2896770 acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaactgttcgcataacaa 2896869  T
Q  192 tagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatttgccactaactcgaccgcaatagt 276  Q
    | ||  ||| ||| |||||||  || || || |||||||||||||| ||||| || ||||| |||||||| || || ||||||||    
T  2896870 ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaatagt 2896954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 29777586 - 29777524
Alignment:
Q  95 tcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttcca 157  Q
    |||||||| | |||||| ||||||||| ||| |||||| |||| |||||||||||||||||||    
T  29777586 tcatcaaatgcttcaaaaatatcaatacttggttgatgtatggtacagacaacagttcttcca 29777524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 41687151 - 41687311
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatggctctcataacaa 191  Q
    |||||||||||||||||||||||||||||  ||| ||| ||||| |  ||||| |||||||| ||  | ||| || ||||||| |  |  | ||||||||    
T  41687151 acctcatcaaaagattcaaatatatcaatgcttggttggtgaattgtgcagaccacagttctccctgtatccgctgtatttctgacagtacgcataacaa 41687250  T
Q  192 tagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatt 252  Q
    | ||  ||| ||| ||||| || ||||| || ||||||||||| || || |||||||||||    
T  41687251 ttgctgcagctctggcatcaaggcctgatgtaggctcatccataaagatgattgaaggatt 41687311  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 25522821 - 25522886
Alignment:
Q  92 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttcca 157  Q
    ||||||||||| | |||||||||||||||| |||  ||||| |||| ||| || ||||||||||||    
T  25522821 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttcca 25522886  T

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