View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7408_low_14 (Length: 295)
Name: NF7408_low_14
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 4713256 - 4713512
Alignment:
| Q |
15 |
gttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4713256 |
gttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttacaatg |
4713355 |
T |
|
| Q |
115 |
aaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
4713356 |
aaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttgagttgtttgca |
4713455 |
T |
|
| Q |
215 |
tgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgc |
271 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
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| T |
4713456 |
tggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgc |
4713512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 4854623 - 4854882
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
111 |
Q |
| |
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|||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4854623 |
ggtgatgtacttcttgagatgttgtgtgcgagaccacctttggatcatttattggataagaaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
4854722 |
T |
|
| Q |
112 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
211 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
4854723 |
atgaaggagtgatagttgaagagatggtggacccattcataaaggactctataacaagtgagtgtttgaaattttattgtcaaatggtgttgagttgttt |
4854822 |
T |
|
| Q |
212 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgc |
271 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||| |||||| |||||||| |||| |
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|
| T |
4854823 |
gcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaactttagagcttgc |
4854882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 4862818 - 4862535
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
111 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||| || ||||| || ||| |||||| || | || | || ||| |||||||||||| |
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| T |
4862818 |
ggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttaca |
4862719 |
T |
|
| Q |
112 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
211 |
Q |
| |
|
|||||||||| ||| ||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862718 |
atgaaggtgtcataattgaagagatggtagatccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
4862619 |
T |
|
| Q |
212 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862618 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
4862535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 4785022 - 4785305
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||| |||||| | ||| || || ||| ||| |||||||| |
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|
| T |
4785022 |
ggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttaca |
4785121 |
T |
|
| Q |
112 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
211 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
4785122 |
atgaaggtatggtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgttt |
4785221 |
T |
|
| Q |
212 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||| |||||||||||||| |
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| T |
4785222 |
gcatgatgatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgagga |
4785305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 4698374 - 4698660
Alignment:
| Q |
9 |
tttggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgtt |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||||| || | || || |||| ||| ||||| |
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|
| T |
4698374 |
tttggtgttgtgcttcttgaggtattgtgtgcgagaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgtt |
4698473 |
T |
|
| Q |
109 |
acaatgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttg |
208 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||| ||| | ||| ||||||| |||||||| || ||||| |
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|
| T |
4698474 |
acaatgaaggtgtgatcatcgaagagatggtggacccgttcataaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttg |
4698573 |
T |
|
| Q |
209 |
tttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4698574 |
tttgcatgatgatggaaatcaacggatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagataagtgagga |
4698660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 4817451 - 4817734
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| || |||||||||||| |||||| | ||| || || ||| ||| |||||||| |
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|
| T |
4817451 |
ggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttaca |
4817550 |
T |
|
| Q |
112 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
211 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
4817551 |
atgaaggtatggtaattgaagatatggtggacccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgttt |
4817650 |
T |
|
| Q |
212 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||| |||||||||||||| |
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|
| T |
4817651 |
gcatgatgatggaaatcaacgaatgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgagga |
4817734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 4629842 - 4629779
Alignment:
| Q |
8 |
gtttggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |
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|
| T |
4629842 |
gtttggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag |
4629779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 4642444 - 4642350
Alignment:
| Q |
201 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| |||| | |||||||||| |
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|
| T |
4642444 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgagga |
4642350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 4665864 - 4665594
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataaggaaaaagtgaacatggttgctttgttcaaaaaatgttaca |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||| | | | | | ||| || ||| |||||||||||| |
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|
| T |
4665864 |
ggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataagaatactgctagtctagtttgttggtttaaaaaatgttacg |
4665765 |
T |
|
| Q |
112 |
atgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
211 |
Q |
| |
|
||||||||||| | ||||| | || || || || ||| ||| ||| ||||| ||| ||||| ||||||| |||||| | ||| |||||||| || |
|
|
| T |
4665764 |
atgaaggtgtggcaattgaacaaatagttgatccattcgtaagggattctatcacagatgagtacttgaaatattattgcaagttggcgttaagttgctt |
4665665 |
T |
|
| Q |
212 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
282 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
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|
| T |
4665664 |
gcatgatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4665594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 4652449 - 4652390
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttggatcattctttggataag |
71 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |
|
|
| T |
4652449 |
ggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgtgatttggataag |
4652390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 4635597 - 4635503
Alignment:
| Q |
201 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
295 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| || | | |||||||||| |
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|
| T |
4635597 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgagga |
4635503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 4635786 - 4635744
Alignment:
| Q |
12 |
ggtgttgtgcttcttgaggtgttgtgtgcgagaccacctttgg |
54 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4635786 |
ggtgtggtgcttcttgaggtgttgtgtgctaggccacctttgg |
4635744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 4629649 - 4629568
Alignment:
| Q |
201 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
282 |
Q |
| |
|
|||||||| |||||||| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4629649 |
ttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4629568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 4660541 - 4660448
Alignment:
| Q |
201 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagg |
294 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | ||||||||| |
|
|
| T |
4660541 |
ttaagttgtttgcatgatgatgggactcaacgaccttcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgagg |
4660448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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