View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_low_15 (Length: 267)

Name: NF7408_low_15
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_low_15
NF7408_low_15
[»] chr8 (4 HSPs)
chr8 (1-253)||(7942809-7943061)
chr8 (102-142)||(1502689-1502729)
chr8 (102-142)||(39691133-39691173)
chr8 (102-142)||(40914590-40914630)
[»] chr7 (3 HSPs)
chr7 (87-143)||(22688955-22689011)
chr7 (102-139)||(40998401-40998438)
chr7 (98-142)||(19914950-19914994)
[»] chr2 (1 HSPs)
chr2 (102-142)||(40347966-40348006)
[»] chr3 (1 HSPs)
chr3 (92-138)||(43589186-43589232)
[»] chr6 (2 HSPs)
chr6 (98-143)||(12132573-12132618)
chr6 (98-143)||(12735496-12735541)
[»] scaffold0268 (1 HSPs)
scaffold0268 (92-132)||(20257-20297)
[»] chr4 (1 HSPs)
chr4 (98-142)||(41370183-41370227)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 7943061 - 7942809
Alignment:
Q  1 aaatagttaagtgtggtgtaaaaatgaatacaaaagattttgttaaagaaaatgataacgaatgtccttcgaattagtttttattgatctaaaatgttaa 100  Q
    |||||| ||||||||||||||||| ||||||||| ||||||| ||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  7943061 aaatagataagtgtggtgtaaaaaagaatacaaaggattttgataaggaaaataataacgagtgtccttcgaattagtttttaatgatctaaaatgttaa 7942962  T
Q  101 gtttttatgaatatttgtgtatttaatgcattaaaaattgaatgaaatattttcttaatttaaaatcgttaaagagtatctgaagcattcgttggtaaga 200  Q
    |||||||||||||||| |||||||||||||||||||||| |||  |||| ||| ||||||||||||||||||||||| ||||||||| ||||||  ||||    
T  7942961 gtttttatgaatatttatgtatttaatgcattaaaaattaaatataatacttttttaatttaaaatcgttaaagagtgtctgaagcactcgttgacaaga 7942862  T
Q  201 cccacgaattacaaacaagtgtccatgagacaaatacactttatatgcttctt 253  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7942861 tccaagaattacaaacaagtgtccatgagacaaatacactttatatgcttctt 7942809  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 1502689 - 1502729
Alignment:
Q  102 tttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  1502689 tttttatgaaaatttgcgtatttaatgcattgaaaattgaa 1502729  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 39691133 - 39691173
Alignment:
Q  102 tttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  39691133 tttttatgaaaatttgtgtattcaatgcattgaaaattgaa 39691173  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 40914590 - 40914630
Alignment:
Q  102 tttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  40914590 tttttatgaaaatttgtgaatttaatgcattgaaaattgaa 40914630  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 22688955 - 22689011
Alignment:
Q  87 atctaaaatgttaagtttttatgaatatttgtgtatttaatgcattaaaaattgaat 143  Q
    |||||||||  ||| |||||||||  | |||||||||||||||||||||||||||||    
T  22688955 atctaaaatagtaattttttatgacaacttgtgtatttaatgcattaaaaattgaat 22689011  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 40998401 - 40998438
Alignment:
Q  102 tttttatgaatatttgtgtatttaatgcattaaaaatt 139  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40998401 tttttatgaaaatttgtgtatttaatacattaaaaatt 40998438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 19914950 - 19914994
Alignment:
Q  98 taagtttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||||||||||||||| ||||| || ||| |||||||||    
T  19914950 taagtttttatgaatatttgtgcatttattgtattgaaaattgaa 19914994  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 40347966 - 40348006
Alignment:
Q  102 tttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  40347966 tttttatgaaaatttgtgtatttaatacattaaaaattgaa 40348006  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 43589186 - 43589232
Alignment:
Q  92 aaatgttaagtttttatgaatatttgtgtatttaatgcattaaaaat 138  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||    
T  43589186 aaatggtaagtttttataaaaatttgtgtttttaatgcattaaaaat 43589232  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 12132618 - 12132573
Alignment:
Q  98 taagtttttatgaatatttgtgtatttaatgcattaaaaattgaat 143  Q
    ||||||| |||||| ||||||||||| |||||||| ||||||||||    
T  12132618 taagtttctatgaaaatttgtgtattaaatgcattgaaaattgaat 12132573  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 12735496 - 12735541
Alignment:
Q  98 taagtttttatgaatatttgtgtatttaatgcattaaaaattgaat 143  Q
    |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  12735496 taagtttttatgaaaatttgtgtatttaatgtatcgaaaattgaat 12735541  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 20257 - 20297
Alignment:
Q  92 aaatgttaagtttttatgaatatttgtgtatttaatgcatt 132  Q
    ||||| |||||||||||||| | ||||||||||||||||||    
T  20257 aaatgataagtttttatgaaaagttgtgtatttaatgcatt 20297  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 41370183 - 41370227
Alignment:
Q  98 taagtttttatgaatatttgtgtatttaatgcattaaaaattgaa 142  Q
    |||||||||||||| ||||||||| | |||||||| |||||||||    
T  41370183 taagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaa 41370227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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