View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_17 (Length: 240)
Name: NF7408_low_17
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_17 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31897933 - 31898167
Alignment:
| Q |
1 |
tgtaaaagaacgccgtatgaagtaggttggatctataagataatgatgatactctacaagtttaatttattaagtacagtaaaaaattcataaaaactat |
100 |
Q |
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| T |
31897933 |
tgtaaaagaacgccgtatgaagtaggttggatctataagataatgatgactctctacaagtttaatttattaagta-----aaaaattcataaaaactat |
31898027 |
T |
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| Q |
101 |
atttctcaagttttagtttatttatttttctttgatattcacgaaaaacatgcatgattgtctcaacaaattcatcacaatttcattgttattagtaatc |
200 |
Q |
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| T |
31898028 |
atttctcaagttttagtttatttatttttctttgatattcacgaaaaacatgcatgattgtctcagcaaattcatcacaatttcattgttattagtgatc |
31898127 |
T |
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| Q |
201 |
actatattagttagaatcaaatagaatttgtataacatct |
240 |
Q |
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| T |
31898128 |
actatattagttagaatcaaatagaatttggataacatct |
31898167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31929877 - 31930111
Alignment:
| Q |
1 |
tgtaaaagaacgccgtatgaagtaggttggatctataagataatgatgatactctacaagtttaatttattaagtacagtaaaaaattcataaaaactat |
100 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||| |
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| T |
31929877 |
tgtaaaaaaacgccatatgaagtaggttggatctataagataatgatgatactctacaaatttaatttattaagtaaatta-----ttcataaaaactat |
31929971 |
T |
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| Q |
101 |
atttctcaagttttagtttatttatttttctttgatattcacgaaaaacatgcatgattgtctcaacaaattcatcacaatttcattgttattagtaatc |
200 |
Q |
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| T |
31929972 |
attgctcaagttttagtttatttatttttctttgatattcaagaaaaacatgcatgattgtctcaacaaattaatcacaatttcattgttattggtgatc |
31930071 |
T |
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| Q |
201 |
actatattagttagaatcaaatagaatttgtataacatct |
240 |
Q |
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| T |
31930072 |
aaaatattagttagaatcaaatagaatttgtataacatct |
31930111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 31842727 - 31842886
Alignment:
| Q |
81 |
aaaaaattcataaaaactatatttctcaagttttagtttatttatttttctttgatattcacgaaaaacatgcatgattgtctcaacaaattcatcacaa |
180 |
Q |
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| T |
31842727 |
aaaaaattcataaaaactccttttctcaaattttagtttattttctttttcttgatatttatgaaaaagatgcatgattgtctaaagaaattcatttaaa |
31842826 |
T |
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| Q |
181 |
tttcattgttattagtaatcactatattagttagaatcaaatagaatttgtataacatct |
240 |
Q |
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| T |
31842827 |
tttaattgttattagtgatcactatattagttagatttaaatagaatttaaataacatct |
31842886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 31845587 - 31845474
Alignment:
| Q |
123 |
tatttttctttgatattcacgaaaaacatgcatgattgtctcaacaaattcatcacaatttcattgttattagtaatcactatattagttagaatcaaat |
222 |
Q |
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||||||||||||||||| | | | |||| || ||||||||||||||| | |||||| ||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
31845587 |
tatttttctttgatatttatgcaggacatacaagattgtctcaacaaaat-atcacattttcattgtctttagtgatcactatatgagttagaatcaaaa |
31845489 |
T |
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| Q |
223 |
agaatttgtataaca |
237 |
Q |
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| T |
31845488 |
agaatttgaataaca |
31845474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31863719 - 31863794
Alignment:
| Q |
1 |
tgtaaaagaacgccgtatgaagtaggttggatctataagataatgatgatactctacaagtttaatttattaagta |
76 |
Q |
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|||||||||| ||| |||||||||| |||||||||| |||||| ||| |||||||||||||| || |||||||||| |
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| T |
31863719 |
tgtaaaagaatgccatatgaagtagattggatctattagataacgattatactctacaagttaaagttattaagta |
31863794 |
T |
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