View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_19 (Length: 219)
Name: NF7408_low_19
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4140880 - 4140685
Alignment:
| Q |
1 |
ccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgc |
100 |
Q |
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| T |
4140880 |
ccgaaagaagtccacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgc |
4140781 |
T |
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| Q |
101 |
aagaatagaaacacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtacc |
196 |
Q |
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| T |
4140780 |
aagaatagaaatacatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtacc |
4140685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4129160 - 4129095
Alignment:
| Q |
20 |
tcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
85 |
Q |
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| T |
4129160 |
tcaccagaaacaatcttttccatcaacacttccaaagaagctgcaagaagtgcttctcccacaata |
4129095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 13932579 - 13932522
Alignment:
| Q |
28 |
aacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
85 |
Q |
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|||||| |||| |||||||| ||| |||||||||| ||| ||||||||||| |||||| |
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| T |
13932579 |
aacaatttttttcaacaacagctccaaagaagctgaaagaagtgcttctaccacaata |
13932522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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