View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_2 (Length: 476)
Name: NF7408_low_2
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 182 - 461
Target Start/End: Original strand, 6036735 - 6037014
Alignment:
| Q |
182 |
ttggaattttggtatcggataatgcaatgtctcaaatcgcaatcattttgaataaacaccaaattgaagggcttccatcagcaactgcaacagcaaaatt |
281 |
Q |
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| T |
6036735 |
ttggaattttggtatcggataatgcaatgtctcaaatcgcaatcattttcaataaacgccaaattgaagggcttccatcagcaactgcaacagcaaaatt |
6036834 |
T |
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| Q |
282 |
aataagctgaaacattgctccgtggaaaatctctgtgaaaaaacgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggat |
381 |
Q |
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| T |
6036835 |
aataagctgaaacattgctccgtggaaaatctctgtgaaaaaatgagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggat |
6036934 |
T |
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| Q |
382 |
ggaaataaaatttgagagagatatctgatgatttgatccatcttttaatcacgatatctagatatttcaccttttgatgt |
461 |
Q |
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| T |
6036935 |
ggaaataaaatttgagagagatatctgatgatttgatccatcttttaatcacggtatctagatatttcaccttttgatgt |
6037014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6036594 - 6036719
Alignment:
| Q |
1 |
ccaaagcggggtagctcatgatatagactatctttggatgatgtcgccatcagatggaacatcttgtttagctgctgggacacgaaaagttagataattc |
100 |
Q |
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| T |
6036594 |
ccaaagcggggtagctcatgatatagactatctttggatgatgtcgccatcagatggaacatcttgtttagctgctgggacacgaaaagttggataattc |
6036693 |
T |
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| Q |
101 |
agtttcaagaaaaggtcactgattgc |
126 |
Q |
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| T |
6036694 |
agtttcaagaaaaggtcactgattgc |
6036719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 459
Target Start/End: Original strand, 31474746 - 31475180
Alignment:
| Q |
34 |
ttggatgatgtcg-ccatcagatggaacatcttgtttagctgctgggacacgaaaagttagataattcagtttcaagaaaaggtcactgattgcgtcacc |
132 |
Q |
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| T |
31474746 |
ttggatgatgtcgtccatcagaccgagcaactttctttgctgctgggacacggaaagtcagataatttagtttcaagaaaaggtccctgattgcttctcc |
31474845 |
T |
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| Q |
133 |
tgatttgaattg-----taaatgttgcttcgttcaccaaggaatcaggacacggttggaattttggtatcggataatgcaatgtctcaaa--tcgcaatc |
225 |
Q |
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| T |
31474846 |
taatctgttttggactctaactgcagcttccttcaccgaagaatcaggacccaagttgaatttcgatatcaaatgatgcaatgtctcaaagattgcgagc |
31474945 |
T |
|
| Q |
226 |
attttgaataaacaccaaattgaagggcttccatcagcaactgcaacagcaaaattaataagctgaaacattgctccgtggaaaatctctgtgaaaaaac |
325 |
Q |
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| T |
31474946 |
attttgaataaacaccaaatggaagggcttccatcagcaactgcatcagcgaaattcagaagctgaaacgttgctccgtggaaaacctctgtgaaacaac |
31475045 |
T |
|
| Q |
326 |
gagtagcagaggaggtgaaacccaaaatgaagtgatcacatagccgttgttcggatggaaataaaat-ttgagagagatatctgatgatttgatccatct |
424 |
Q |
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| T |
31475046 |
gagtagcagaggaagcgaaacctgaaaagacatgatcacagagtcgttgttcaaatggaaatagaatcttcagagagatttctgatgctgtgatccactt |
31475145 |
T |
|
| Q |
425 |
tttaatcacgatatctagatatttcaccttttgat |
459 |
Q |
| |
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||||||||| |||||| |||||||||| |||||| |
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| T |
31475146 |
tttaatcacattatctacatatttcaccctttgat |
31475180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 71 - 422
Target Start/End: Original strand, 40842344 - 40842703
Alignment:
| Q |
71 |
gctgctgggacacgaaaagttagataattcagtttcaagaaaaggtcactgattgcgtcacctgat-----ttgaattgtaaatgttgcttcgttcacca |
165 |
Q |
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|||||||||||||| || || |||||||| ||||||||||||||||| |||||||| || ||| || ||| | ||||| || ||||| |||||| |
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| T |
40842344 |
gctgctgggacacggaaggtcagataatttagtttcaagaaaaggtccctgattgcttctcctaatctgttttggactgtaactgcagcttccttcaccg |
40842443 |
T |
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| Q |
166 |
aggaatcaggacacggttggaattttggtatcggataatgcaatgtctcaaa--tcgcaatcattttgaataaacaccaaattgaagggcttccatcagc |
263 |
Q |
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| T |
40842444 |
aagaatcaggacccaagtggaatttcgatatcagatgatgcaaagtctcaaagattgcaagcattttgaataaacaccaaatggaagggcttccatcagc |
40842543 |
T |
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| Q |
264 |
aactgcaacagcaaaattaataagctgaaacattgctccgtggaaaatctctgtgaaaaaacgagtagcagaggaggtgaaacccaaaatgaagtgatca |
363 |
Q |
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||||||| ||||||||| | ||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||| ||| || |||||| |
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| T |
40842544 |
aactgcattagcaaaatttagaagctgaaatgttgatccgtggaaaacctctgtgaaacaacgagtagcagaggaggcgaaacctgaaaagacatgatca |
40842643 |
T |
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| Q |
364 |
catagccgttgttcggatggaaataaaat-ttgagagagatatctgatgatttgatccat |
422 |
Q |
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|| || |||||||| ||||||||| ||| || |||| ||| ||||||| | |||||||| |
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| T |
40842644 |
cagagtcgttgttcaaatggaaatagaatcttaagagcgatttctgatgctgtgatccat |
40842703 |
T |
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