View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7408_low_20 (Length: 214)
Name: NF7408_low_20
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 41896383 - 41896180
Alignment:
| Q |
1 |
attaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagccacttgaattatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896383 |
attaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagccacttgaattatac |
41896284 |
T |
|
| Q |
101 |
attgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcacttgtagttttgtctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896283 |
attgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcacttgtagttttgtctt |
41896184 |
T |
|
| Q |
201 |
gatg |
204 |
Q |
| |
|
|||| |
|
|
| T |
41896183 |
gatg |
41896180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University