View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_low_3 (Length: 466)

Name: NF7408_low_3
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_low_3
NF7408_low_3
[»] chr1 (2 HSPs)
chr1 (1-451)||(33318709-33319159)
chr1 (265-334)||(16567279-16567349)
[»] chr8 (5 HSPs)
chr8 (265-327)||(16330973-16331036)
chr8 (265-327)||(5071670-5071732)
chr8 (270-313)||(3943757-3943800)
chr8 (278-326)||(30585118-30585167)
chr8 (267-304)||(41953172-41953209)
[»] chr2 (2 HSPs)
chr2 (265-339)||(30289790-30289865)
chr2 (265-313)||(29931744-29931792)
[»] chr7 (2 HSPs)
chr7 (270-315)||(6632425-6632470)
chr7 (279-332)||(1741066-1741119)
[»] chr6 (5 HSPs)
chr6 (250-326)||(8013827-8013904)
chr6 (265-305)||(32862761-32862801)
chr6 (266-313)||(34443049-34443096)
chr6 (268-313)||(2468480-2468525)
chr6 (270-310)||(34406440-34406480)
[»] chr5 (4 HSPs)
chr5 (272-334)||(34166108-34166171)
chr5 (258-312)||(26208003-26208057)
chr5 (268-305)||(14332167-14332204)
chr5 (265-309)||(15073262-15073306)
[»] chr4 (8 HSPs)
chr4 (271-333)||(9018880-9018943)
chr4 (273-330)||(32754601-32754659)
chr4 (265-338)||(49477686-49477760)
chr4 (258-330)||(7276736-7276809)
chr4 (268-313)||(27131680-27131725)
chr4 (260-312)||(7367561-7367613)
chr4 (267-330)||(22402372-22402436)
chr4 (260-292)||(52738958-52738990)


Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 33319159 - 33318709
Alignment:
Q  1 tcaagcctgcgttgaaattgaagcagctaaaatatctgagataatggaagaggaaaacaaatcttctactatttcaggtattttctgtcataattgattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33319159 tcaagcctgcgttgaaattgaagcagctaaaatatctgagataatggaagaggaaaacaaatcttctactatttcaggtattttctgtcataattgattt 33319060  T
Q  101 tttgggtagatttttgccattttatgatactgtcatgatttggaacacattctacaattattgatatttgtacacaattttatataaatttacctcaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33319059 tttgggtagatttttgccattttatgatactgtcatgatttggaacacattctacaattattgatatttgtacacaattttatacaaattttcctcaatc 33318960  T
Q  201 atggaaaataaatccaacactggatatcaaatgcatgtacggtgacacatgtctgtatccgaccctgacacatgtggttacattcaatcactctcatttt 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33318959 atggaaaataaatccaacactgaatatcaaatgcatgtacggtgacacatgtctgtatccgaccctgacacatgtggttacatttaatcactctcatttt 33318860  T
Q  301 cttaagttattactgtgtctacatgtcagtgtcatgtccggttatgcaacagtgcattctagtaacttgccgaagttattaatttttaaagaaaattgcg 400  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33318859 cttaagttattactgtgtctacatatcagtgtcatgtccggttatgcaacagtgcattctagtaacttgctgaagttattaatttttaaagaaaattgcg 33318760  T
Q  401 agtccattctattttgtatatctaaaatatcatctgaatcatgactttctt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33318759 agtccattctattttgtatatctaaaatatcatctgaatcatgactttctt 33318709  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 16567349 - 16567279
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttattac-tgtgtctacatgtcagtgtca 334  Q
    |||||||||||||||||||||||||| |  ||||||||||| ||||| | |||||||||||||||||||||    
T  16567349 ctgacacatgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtcagtgtca 16567279  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 16331036 - 16330973
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttattact-gtgtctacatgtc 327  Q
    |||||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||||||    
T  16331036 ctgacacatgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtc 16330973  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 5071732 - 5071670
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttattactgtgtctacatgtc 327  Q
    ||||||||| || |||||||||||||||   |||||||||||||||||| |||||||||||||    
T  5071732 ctgacacatatgattacattcaatcacttgtattttcttaagttattaccgtgtctacatgtc 5071670  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 3943800 - 3943757
Alignment:
Q  270 acatgtggttacattcaatcactctcattttcttaagttattac 313  Q
    ||||||||||||||||||||||| | |||||||||| |||||||    
T  3943800 acatgtggttacattcaatcacttttattttcttaaattattac 3943757  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 30585118 - 30585167
Alignment:
Q  278 ttacattcaatcactctcattttcttaagttattact-gtgtctacatgt 326  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaattattattagtgtctacatgt 30585167  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 41953172 - 41953209
Alignment:
Q  267 gacacatgtggttacattcaatcactctcattttctta 304  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  41953172 gacacatgtgattacattcaatcactttcattttctta 41953209  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 30289865 - 30289790
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttatta-ctgtgtctacatgtcagtgtcatgtcc 339  Q
    ||||||||  |||||||||||||| |||| ||||||||||| |||||| | ||||||||||||||||||| |||||    
T  30289865 ctgacacacatggttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtcgtgtcc 30289790  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 29931744 - 29931792
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttattac 313  Q
    |||||||||||| ||||||||| | ||||||||||||| || |||||||    
T  29931744 ctgacacatgtgattacattcagttactctcattttctcaaattattac 29931792  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 6632470 - 6632425
Alignment:
Q  270 acatgtggttacattcaatcactctcattttcttaagttattactg 315  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  6632470 acatgtggttacattcaatcacttttattttcttaatttattactg 6632425  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 1741119 - 1741066
Alignment:
Q  279 tacattcaatcactctcattttcttaagttattactgtgtctacatgtcagtgt 332  Q
    ||||||||||||||  ||||||| ||| ||||||| || |||||||||||||||    
T  1741119 tacattcaatcacttccattttcataaattattacggtatctacatgtcagtgt 1741066  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 8013827 - 8013904
Alignment:
Q  250 tgtctgtatccgaccctgacacatgtggttacattcaatcactctcattttcttaagttattact-gtgtctacatgt 326  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||   ||||| | || |||||||| ||||||||||||    
T  8013827 tgtcggtatctgactctgacacatgtggttacattcaatcacttatattttttcaaattattactagtgtctacatgt 8013904  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 32862761 - 32862801
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaa 305  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  32862761 ctgacacacgtggttacattcaatcactttcattttcttaa 32862801  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 34443049 - 34443096
Alignment:
Q  266 tgacacatgtggttacattcaatcactctcattttcttaagttattac 313  Q
    ||||||||||||||||||||||||||| ||| ||||| || |||||||    
T  34443049 tgacacatgtggttacattcaatcactttcactttctcaaattattac 34443096  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 2468480 - 2468525
Alignment:
Q  268 acacatgtggttacattcaatcactctcattttcttaagttattac 313  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||||    
T  2468480 acacatgtggttacattcaattacttccattttcttaaattattac 2468525  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 34406480 - 34406440
Alignment:
Q  270 acatgtggttacattcaatcactctcattttcttaagttat 310  Q
    |||| |||||||||||||||||| |||||||||||| ||||    
T  34406480 acatatggttacattcaatcactttcattttcttaaattat 34406440  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 34166171 - 34166108
Alignment:
Q  272 atgtggttacattcaatcactctcattttcttaagttattactg-tgtctacatgtcagtgtca 334  Q
    ||||| ||||||||||||| | |||||||||||| |||||| || |||||||||||| ||||||    
T  34166171 atgtgattacattcaatcaatttcattttcttaaattattattgatgtctacatgtcggtgtca 34166108  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 26208003 - 26208057
Alignment:
Q  258 tccgaccctgacacatgtggttacattcaatcactctcattttcttaagttatta 312  Q
    |||||| ||||||||||||||||||||||| |||| | ||||||| || ||||||    
T  26208003 tccgacactgacacatgtggttacattcaaacacttttattttctcaaattatta 26208057  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 14332167 - 14332204
Alignment:
Q  268 acacatgtggttacattcaatcactctcattttcttaa 305  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  14332167 acacatgtggttacattcaatcacttttattttcttaa 14332204  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 15073306 - 15073262
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagtta 309  Q
    |||| |||||||  |||||||||||||| ||||||||||||||||    
T  15073306 ctgatacatgtgactacattcaatcactttcattttcttaagtta 15073262  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 9018880 - 9018943
Alignment:
Q  271 catgtggttacattcaatcactctcattttcttaagttattact-gtgtctacatgtcagtgtc 333  Q
    |||||||||||||||||| ||| ||||||||| || ||| |||| ||||||||||||| |||||    
T  9018880 catgtggttacattcaattactttcattttctcaaattactactggtgtctacatgtcggtgtc 9018943  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 32754659 - 32754601
Alignment:
Q  273 tgtggttacattcaatcactctcattttcttaagttattac-tgtgtctacatgtcagt 330  Q
    |||||||||||||||||||| ||||||||||||  ||||||  |||||||| |||||||    
T  32754659 tgtggttacattcaatcactttcattttcttaaactattacaagtgtctacgtgtcagt 32754601  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 49477760 - 49477686
Alignment:
Q  265 ctgacacatgtggttacattcaatcactctcattttcttaagttattactg-tgtctacatgtcagtgtcatgtc 338  Q
    |||||||||||| |||||||||| ||||  |||||| | || ||||| | | |||||||||||||||||||||||    
T  49477760 ctgacacatgtgcttacattcaaccacttccattttatcaaattattcccgatgtctacatgtcagtgtcatgtc 49477686  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 7276809 - 7276736
Alignment:
Q  258 tccgaccctgacacatgtggttacattcaatcactctcattttcttaagttatta-ctgtgtctacatgtcagt 330  Q
    |||||| ||||||||||| |||||||| ||| ||| ||||| | ||||||||||| | |||||| |||||||||    
T  7276809 tccgacactgacacatgttgttacatttaattactttcattcttttaagttattatcagtgtctgcatgtcagt 7276736  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 27131680 - 27131725
Alignment:
Q  268 acacatgtggttacattcaatcactctcattttcttaagttattac 313  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||||    
T  27131680 acacatgtggttacattcaattacttccattttcttaaattattac 27131725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 7367613 - 7367561
Alignment:
Q  260 cgaccctgacacatgtggttacattcaatcactctcattttcttaagttatta 312  Q
    |||| ||||||||||||||||| |||||||||  ||||||||| || ||||||    
T  7367613 cgacactgacacatgtggttacgttcaatcaccttcattttctcaaattatta 7367561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 22402436 - 22402372
Alignment:
Q  267 gacacatgtggttacattcaatcactctcattttcttaagttatta-ctgtgtctacatgtcagt 330  Q
    ||||||||||||||||||||||||||   ||||||| || |||||| | || |||||||||||||    
T  22402436 gacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagt 22402372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 52738958 - 52738990
Alignment:
Q  260 cgaccctgacacatgtggttacattcaatcact 292  Q
    |||| ||||||||||||||||||||||||||||    
T  52738958 cgacactgacacatgtggttacattcaatcact 52738990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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