View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_5 (Length: 389)
Name: NF7408_low_5
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 27878653 - 27878805
Alignment:
| Q |
19 |
tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa |
118 |
Q |
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| T |
27878653 |
tggcacataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa |
27878752 |
T |
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| Q |
119 |
atcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc |
172 |
Q |
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| T |
27878753 |
atcatttgttcaa-cttcgtttccatcgtgattacctctttatctctgaaaccc |
27878805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 27878870 - 27878935
Alignment:
| Q |
237 |
tttataccctttataaacaaagatacgatatacttacatcttgacatgtattttaaatatcaacat |
302 |
Q |
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| T |
27878870 |
tttataccctttataaacaaagatacaatatacttacatcttgacatgtattttaaatatcaacat |
27878935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 27878973 - 27879007
Alignment:
| Q |
339 |
ttcccgtgcaggccacgggctgcaaactagtatat |
373 |
Q |
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| T |
27878973 |
ttcccgtgcaggccacgggctgcaaactagtatat |
27879007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 5986455 - 5986608
Alignment:
| Q |
19 |
tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggcgcatttggtaaagaccgcaaa |
118 |
Q |
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| T |
5986455 |
tggcaaataggatcaaaagatgtcattaaaatagttaaatagtttaagtaatgttataaaaatagtcgaaaaggttggagtatttggtaaagaccgcaaa |
5986554 |
T |
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| Q |
119 |
atcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc |
172 |
Q |
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| T |
5986555 |
atcatttgttcaactttcatttccatcgtgattacctctttatctctaaaaccc |
5986608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 5986661 - 5986719
Alignment:
| Q |
240 |
ataccctttataaacaaagatacgatatacttacatcttgacatgtattttaaatatca |
298 |
Q |
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| T |
5986661 |
ataccctttataaataaagatatgatatatttacattttgacatgtattttaaatatca |
5986719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 24756895 - 24756827
Alignment:
| Q |
19 |
tggcaaataagatcaaaagatgtcattaatatagttaaatagtttaagtaatgttataaaaatagtcga |
87 |
Q |
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| T |
24756895 |
tggcaaataagatgaaaagacgtcattaaaatgataaaatagtttaaataatgttataaaaataatcga |
24756827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 34231081 - 34231126
Alignment:
| Q |
23 |
aaataagatcaaaagatgtcattaatatagttaaatagtttaagta |
68 |
Q |
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| T |
34231081 |
aaataagatcaaaatatgtcattaaaataataaaatagtttaagta |
34231126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 34226981 - 34227053
Alignment:
| Q |
100 |
atttggtaaagaccgcaaaatcatttgttcaattttcgtttccatcgtgattatctctttatctctgaaaccc |
172 |
Q |
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| T |
34226981 |
atttggtaaagaccgcaaaatcgtttgtttaactttcattgccatcatgcttacatctttttctctaaaaccc |
34227053 |
T |
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