View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7408_low_6 (Length: 378)

Name: NF7408_low_6
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7408_low_6
NF7408_low_6
[»] chr4 (2 HSPs)
chr4 (75-223)||(32351514-32351661)
chr4 (341-369)||(15352221-15352249)
[»] scaffold0002 (1 HSPs)
scaffold0002 (76-223)||(451804-451950)
[»] chr8 (4 HSPs)
chr8 (96-223)||(45109315-45109441)
chr8 (114-223)||(6997817-6997924)
chr8 (75-137)||(6997924-6997986)
chr8 (341-369)||(22827008-22827036)
[»] chr3 (2 HSPs)
chr3 (141-223)||(27223463-27223547)
chr3 (341-369)||(20460451-20460479)
[»] scaffold1695 (1 HSPs)
scaffold1695 (340-369)||(1282-1311)
[»] scaffold0036 (1 HSPs)
scaffold0036 (340-369)||(75336-75365)
[»] scaffold0031 (1 HSPs)
scaffold0031 (340-369)||(54727-54756)
[»] scaffold0015 (1 HSPs)
scaffold0015 (340-369)||(191231-191260)
[»] chr5 (3 HSPs)
chr5 (340-369)||(17411608-17411637)
chr5 (340-369)||(26681753-26681782)
chr5 (340-369)||(26953360-26953389)
[»] chr2 (3 HSPs)
chr2 (340-369)||(24175953-24175982)
chr2 (340-369)||(24871053-24871082)
chr2 (341-369)||(24736557-24736585)
[»] chr1 (3 HSPs)
chr1 (340-369)||(28622592-28622621)
chr1 (340-368)||(8760536-8760564)
chr1 (341-369)||(16079368-16079396)
[»] scaffold0177 (1 HSPs)
scaffold0177 (341-369)||(6873-6901)
[»] scaffold0037 (1 HSPs)
scaffold0037 (341-369)||(37860-37888)
[»] chr7 (2 HSPs)
chr7 (341-369)||(12319288-12319316)
chr7 (341-369)||(13634383-13634411)
[»] chr6 (1 HSPs)
chr6 (341-369)||(17805357-17805385)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 32351661 - 32351514
Alignment:
Q  75 gagtagtgctgtgcagcacgactcaaaagcccatgaatgtagcacgacgtggcaatcaagtctctggcaaatataaacaagggaaagagaaaatcatgaa 174  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  32351661 gagtagtgctatgcagcacgattcaaaagcccacgaatgtagcacgacgtggcaatcaagtctctggcaaatataaacatgggaaagagaaaaccatgaa 32351562  T
Q  175 taaaaggaaaaagaatccatccaacgatctgtactgtgtcgtgcccatt 223  Q
    ||||| |||||| |   ||||||||| ||| || |||||||||||||||    
T  32351561 taaaa-gaaaaaaagctcatccaacggtctataatgtgtcgtgcccatt 32351514  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 15352221 - 15352249
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  15352221 gatttagatgatttggatgattttgatgt 15352249  T

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Target: scaffold0002 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 451950 - 451804
Alignment:
Q  76 agtagtgctgtgcagcacgactcaaaagcccatgaatgtagcacgacgtggcaatcaagtctctggcaaatataaacaagggaaagagaaaatcatgaat 175  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||    
T  451950 agtagtgctatgtagcgcgactcaaaagcccatgaatgtagcacgacgtggcaattaagtctctagcaaatataaatatgggaaagagaaaatcatgaat 451851  T
Q  176 aaaaggaaaaagaatccatccaacgatctgtactgtgtcgtgcccatt 223  Q
    ||||||||||| |   ||||||||| |||||| |||||||||||||||    
T  451850 aaaaggaaaaa-agctcatccaacggtctgtaatgtgtcgtgcccatt 451804  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 45109315 - 45109441
Alignment:
Q  96 ctcaaaagcccatgaatgtagcacgacgtggcaatcaagtctctggcaaatataaacaagggaaagagaaaatcatgaataaaaggaaaaagaatccatc 195  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||||| | | ||||    
T  45109315 ctcaaaagcccacgaatgtagcacgacgtggcaatcaaatctctggcaaatataaatatgggaaagagaaaatcatgaataaaaagaaaaa-agttcatc 45109413  T
Q  196 caacgatctgtactgtgtcgtgcccatt 223  Q
    |||| |||| || |||||||||||||||    
T  45109414 caacaatctataatgtgtcgtgcccatt 45109441  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 6997924 - 6997817
Alignment:
Q  114 tagcacgacgtggcaatcaagtctctggcaaatataaacaagggaaagagaaaatcatgaataaaaggaaaaagaatccatccaacgatctgtactgtgt 213  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |   ||||||||| |||||| |||||    
T  6997924 tagcacgacgtggcaatcaagtctc-ggcaaatataaacatgggaaagagaaaatcatgaataaaaagaaaaa-agctcatccaacggtctgtaatgtgt 6997827  T
Q  214 cgtgcccatt 223  Q
    ||||||||||    
T  6997826 cgtgcccatt 6997817  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 6997986 - 6997924
Alignment:
Q  75 gagtagtgctgtgcagcacgactcaaaagcccatgaatgtagcacgacgtggcaatcaagtct 137  Q
    |||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  6997986 gagtagtgctatgcagcacgattcaaaagcctacgaatgtagcacgacgtggcaatcaagtct 6997924  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 22827036 - 22827008
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  22827036 gatttagatgatttggatgattttgatgt 22827008  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 27223547 - 27223463
Alignment:
Q  141 gcaaatataaa-caagggaaagagaaaatcatgaataaaaggaaaaagaatc-catccaacgatctgtactgtgtcgtgcccatt 223  Q
    ||||||||||| || |||||||||| ||| ||||||||||||||||| || | ||||||||| |||||| |||||||| ||||||    
T  27223547 gcaaatataaaacatgggaaagagagaataatgaataaaaggaaaaaaaaactcatccaacggtctgtaatgtgtcgttcccatt 27223463  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 20460451 - 20460479
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  20460451 gatttagatgatttggatgattttgatgt 20460479  T

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Target: scaffold1695 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1695
Description:

Target: scaffold1695; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 1282 - 1311
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  1282 cgatttagatgatttggatgattttgatgt 1311  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 75365 - 75336
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  75365 cgatttagatgatttggatgattttgatgt 75336  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 54756 - 54727
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  54756 cgatttagatgatttggatgattttgatgt 54727  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 191231 - 191260
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  191231 cgatttagatgatttggatgattttgatgt 191260  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 17411637 - 17411608
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  17411637 cgatttagatgatttggatgattttgatgt 17411608  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 26681782 - 26681753
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  26681782 cgatttagatgatttggatgattttgatgt 26681753  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 26953389 - 26953360
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  26953389 cgatttagatgatttggatgattttgatgt 26953360  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 24175982 - 24175953
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  24175982 cgatttagatgatttggatgattttgatgt 24175953  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 24871082 - 24871053
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  24871082 cgatttagatgatttggatgattttgatgt 24871053  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 24736585 - 24736557
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  24736585 gatttagatgatttggatgattttgatgt 24736557  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 28622621 - 28622592
Alignment:
Q  340 cgatttagatgatttggatgattttgatgt 369  Q
    ||||||||||||||||||||||||||||||    
T  28622621 cgatttagatgatttggatgattttgatgt 28622592  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 368
Target Start/End: Original strand, 8760536 - 8760564
Alignment:
Q  340 cgatttagatgatttggatgattttgatg 368  Q
    |||||||||||||||||||||||||||||    
T  8760536 cgatttagatgatttggatgattttgatg 8760564  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 16079368 - 16079396
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  16079368 gatttagatgatttggatgattttgatgt 16079396  T

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Target: scaffold0177 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 6873 - 6901
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  6873 gatttagatgatttggatgattttgatgt 6901  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 37888 - 37860
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  37888 gatttagatgatttggatgattttgatgt 37860  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 12319316 - 12319288
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  12319316 gatttagatgatttggatgattttgatgt 12319288  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 13634383 - 13634411
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  13634383 gatttagatgatttggatgattttgatgt 13634411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 17805385 - 17805357
Alignment:
Q  341 gatttagatgatttggatgattttgatgt 369  Q
    |||||||||||||||||||||||||||||    
T  17805385 gatttagatgatttggatgattttgatgt 17805357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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