View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7408_low_7 (Length: 360)
Name: NF7408_low_7
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 1680156 - 1680491
Alignment:
| Q |
6 |
gtttggtgttaaggtaactgtttcttgtgcaagaacacccttggttagagaaccatctgcatagccataggtgtaatcgcaccgcttctcaggagaacac |
105 |
Q |
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| T |
1680156 |
gtttgatgttaaggtaactgtttcttgtgcaagaacacccttggttagagaactatctgcatagccataggtgtaatcgcaccgtttctcaggagaacac |
1680255 |
T |
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| Q |
106 |
tcacctatgtaaggtttgtagcacagtggagaatcacatgagatattagtgtatgttgaagattttagaggatcaaacatagggtttatttggttgtagc |
205 |
Q |
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| T |
1680256 |
tcacctatgtaaggtttgtagcacaatggagaatcacatgagatattagtgtatgttgaagattttagaggatcaaacatagggtttatttggttgtagc |
1680355 |
T |
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| Q |
206 |
accctaaacaaggtacacattggacccatatcaggtcacttcccgtgtctacggtacctgatatttttattggtggagttccaatatacaactccatgag |
305 |
Q |
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| T |
1680356 |
accctaaacaaggtacacattggacccatatcaggtcacttcccgtgtctacggtacctgatatttttattggtggagttccaatatacaactccatgag |
1680455 |
T |
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| Q |
306 |
atattggccaatatatgcatttataggtgcttgtac |
341 |
Q |
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| T |
1680456 |
atattggccaatatatgcatttataggtgcttgtac |
1680491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 1668620 - 1668955
Alignment:
| Q |
6 |
gtttggtgttaaggtaactgtttcttgtgcaagaacacccttggttagagaaccatctgcatagccataggtgtaatcgcaccgcttctcaggagaacac |
105 |
Q |
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| T |
1668620 |
gtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaattatctccgtagccataggtataattgcaacgcttctcaggagaacac |
1668719 |
T |
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| Q |
106 |
tcacctatgtaaggtttgtagcacagtggagaatcacatgagatattagtgtatgttgaagattttagaggatcaaacatagggtttatttggttgtagc |
205 |
Q |
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| T |
1668720 |
acacctgtgtcaagtttgtgacacaaaggagaatcacatgagatgttattgtaagtggatgattttagaggatcaaacatgggttttatttgtttgtagc |
1668819 |
T |
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| Q |
206 |
accctaaacaaggtacacattggacccatatcaggtcacttcccgtgtctacggtacctgatatttttattggtggagttccaatatacaactccatgag |
305 |
Q |
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| T |
1668820 |
aacctaaacaaggtgcacattggatccatataagatcacttcctgtgtctacaaggcctgttatttttattggtggagttccaatatatatttccatgag |
1668919 |
T |
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| Q |
306 |
atattggccaatatatgcatttataggtgcttgtac |
341 |
Q |
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| T |
1668920 |
atgttggccaatataggcatttataggtgcttgtac |
1668955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 1661358 - 1661499
Alignment:
| Q |
6 |
gtttggtgttaaggtaactgtttcttgtgcaagaacacccttggttagagaaccatctgcatagccataggtgtaatcgcaccgcttctcaggagaacac |
105 |
Q |
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||||| ||| |||||| | || |||||||||||||||||||| ||||||||| |||| | ||||||||||| |||| ||| |||||||||||||||||| |
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| T |
1661358 |
gtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaattatctccgtagccataggtataattgcaacgcttctcaggagaacac |
1661457 |
T |
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| Q |
106 |
tcacctatgtaaggtttgtagcacagtggagaatcacatgag |
147 |
Q |
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| T |
1661458 |
acacctgtgtcaagtttgtgacacaaaggagaatcacatgag |
1661499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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