View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7408_low_9 (Length: 339)
Name: NF7408_low_9
Description: NF7408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7408_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4713217 - 4712887
Alignment:
| Q |
1 |
ttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713217 |
ttcgtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaacc |
4713118 |
T |
|
| Q |
101 |
gaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713117 |
gaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataa |
4713018 |
T |
|
| Q |
201 |
tgcaatccccttgctgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713017 |
tgcaatccccttgctgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgtt |
4712918 |
T |
|
| Q |
301 |
ccataaagtcataaacaagaatcatctctgc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4712917 |
ccataaagtcataaacaagaatcatctctgc |
4712887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 4847169 - 4846842
Alignment:
| Q |
4 |
gtaggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaa |
103 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
4847169 |
gtaggtaacattctggatccaaatatcctatactacccttcaccatagtgcttacatgagtcattgatatcccggttggtcccacttttgataacccgaa |
4847070 |
T |
|
| Q |
104 |
atcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
4847069 |
atcagaaaccttagccacccatttttcatccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattc |
4846970 |
T |
|
| Q |
204 |
aatccccttgctgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttcca |
303 |
Q |
| |
|
|| ||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| || |
|
|
| T |
4846969 |
aacccccttgctgcacctaatagaatctcgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgca |
4846870 |
T |
|
| Q |
304 |
taaagtcataaacaagaatcatctctgc |
331 |
Q |
| |
|
| ||||||||||| |||||||||||||| |
|
|
| T |
4846869 |
tgaagtcataaactagaatcatctctgc |
4846842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 4784972 - 4784658
Alignment:
| Q |
15 |
tctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaacct |
114 |
Q |
| |
|
|||||||||||||| || | |||||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
4784972 |
tctggatccaaatacccgagactacctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaacct |
4784873 |
T |
|
| Q |
115 |
tagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| || |
|
|
| T |
4784872 |
tagccacccatttttcatccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgc |
4784773 |
T |
|
| Q |
215 |
tgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataa |
314 |
Q |
| |
|
|||| ||||||||| | ||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||| |
|
|
| T |
4784772 |
ggcacctaatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataa |
4784673 |
T |
|
| Q |
315 |
acaagaatcatctct |
329 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4784672 |
acgagaatcatctct |
4784658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 4862859 - 4863181
Alignment:
| Q |
6 |
aggtagcactctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaat |
105 |
Q |
| |
|
|||||| | |||||||| |||||||| | |||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||| ||||||| |
|
|
| T |
4862859 |
aggtagtattctggatctaaatatccaagactacccttcaccacggtgctgacgtgagtgatagacattcctgttggtcccacttttgataacccgaaat |
4862958 |
T |
|
| Q |
106 |
cagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaa |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||| |||| ||||||||||||| || |
|
|
| T |
4862959 |
cagacaccttagccacccatttttcatccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaa |
4863058 |
T |
|
| Q |
206 |
tccccttgctgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccata |
305 |
Q |
| |
|
||||||||||| | || ||||| | |||||| | ||||| |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| |
|
|
| T |
4863059 |
cccccttgctgcccccaacagaatctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatg |
4863158 |
T |
|
| Q |
306 |
aagtcataaacaagaatcatctc |
328 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
4863159 |
aagtcataaacgagaatcatctc |
4863181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 4698324 - 4698011
Alignment:
| Q |
18 |
ggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttag |
117 |
Q |
| |
|
||||| ||||| || | ||||||||||||| |||||||||| || ||||| || || ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4698324 |
ggatctaaatacccgagactacccttcaccttagtgctgacgtgggtcatcgacattcctgttggtcccacttttgataacccgaaatcagaaaccttag |
4698225 |
T |
|
| Q |
118 |
ccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgc |
217 |
Q |
| |
|
|||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| | || |||||||| |
|
|
| T |
4698224 |
ccacccatttatcatctaacaatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgc |
4698125 |
T |
|
| Q |
218 |
acataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaaca |
317 |
Q |
| |
|
| |||||||| | ||||| | ||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| |
|
|
| T |
4698124 |
ccccaatagaatctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacg |
4698025 |
T |
|
| Q |
318 |
agaatcatctctgc |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4698024 |
agaatcatctctgc |
4698011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 4817401 - 4817087
Alignment:
| Q |
15 |
tctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaacct |
114 |
Q |
| |
|
|||||||||||||| || | |||||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
4817401 |
tctggatccaaatacccgagactacctttcaccatagtgctgacatgggtcatcgacatccctgtaggtcccacttttgataacccaaaatcagaaacct |
4817302 |
T |
|
| Q |
115 |
tagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||| |||| || |
|
|
| T |
4817301 |
tagccacccatttttcatccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgc |
4817202 |
T |
|
| Q |
215 |
tgcacataatagaatattaagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataa |
314 |
Q |
| |
|
|||| ||||||||| | ||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||| |
|
|
| T |
4817201 |
ggcacctaatagaatctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataa |
4817102 |
T |
|
| Q |
315 |
acaagaatcatctct |
329 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4817101 |
acgagaatcatctct |
4817087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 4652499 - 4652653
Alignment:
| Q |
15 |
tctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaacct |
114 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||| ||||| || | || |||| ||| ||||||||||| ||||| || ||||||||||||| |
|
|
| T |
4652499 |
tctggatccaaataccctaggctacccttcaccatcgtgctaacatgggttgtagacatccttgtcggtcccactttcgataatccaaaatcagaaacct |
4652598 |
T |
|
| Q |
115 |
tagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtat |
169 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
4652599 |
tagccacccatttctcatccaacaatatgttggtgctcttcacgtcacggtgtat |
4652653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 4665917 - 4666068
Alignment:
| Q |
18 |
ggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttag |
117 |
Q |
| |
|
|||||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| |||||||| || ||||| || || || |||||||| | |
|
|
| T |
4665917 |
ggatccaaatatccgaggctccccttcaccatcgtgctgacatgggtagttgatatccctgtcggtcccaccttggataacccaaagtcggaaacctttg |
4666016 |
T |
|
| Q |
118 |
ccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtat |
169 |
Q |
| |
|
||| ||||||||||||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
4666017 |
ccatccatttttcatccaacaatatgttggtgctcttcacgtcacggtgtat |
4666068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 4629891 - 4630055
Alignment:
| Q |
18 |
ggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttag |
117 |
Q |
| |
|
|||||||||||||| | || ||||||||||| ||||||||||| || | | ||| ||||| |||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
4629891 |
ggatccaaatatccaaggctccccttcaccatcgtgctgacatgggtagtcgttattcctgtaggtcccaccttggataacccgaaatcagaaaccttag |
4629990 |
T |
|
| Q |
118 |
ccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttc |
182 |
Q |
| |
|
| |||||||| |||||||||| ||| || || ||||| |||||||| ||||| || || |||||| |
|
|
| T |
4629991 |
ctacccatttctcatccaacagtatgttggtgctctttacgtcacgatgtattatcttgtgcttc |
4630055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 4642737 - 4642897
Alignment:
| Q |
69 |
gatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgta |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||| || ||||||||||| | ||||||||||||||||||||| || || ||||| |||||||| |||| |
|
|
| T |
4642737 |
gatatccctgtaggtcccaccttggataacccgaagtcggaaaccttagctatccatttttcatccaacaatatgttggtgctcttcacgtcacgatgta |
4642836 |
T |
|
| Q |
169 |
tgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaat |
229 |
Q |
| |
|
| || || |||||| | | |||||||||||| || || ||||| |||| ||||||||| |
|
|
| T |
4642837 |
ttattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaat |
4642897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 4660783 - 4660984
Alignment:
| Q |
18 |
ggatccaaatatcctatactacccttcaccatagtgctgac---atgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaacct |
114 |
Q |
| |
|
||||||||||| || | || ||||||||||| |||||||| |||||| | ||||||||||| |||||||| || ||||| ||||| || ||||||| |
|
|
| T |
4660783 |
ggatccaaatacccaaggctccccttcaccattgtgctgacgtgatgagtagtcgatatccctgtcggtcccaccttggataacccgaagtcggaaacct |
4660882 |
T |
|
| Q |
115 |
tagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgc |
214 |
Q |
| |
|
|||| |||||||| | |||||||||||| || || ||||| ||||| |||||||| || || || ||| | | |||||||||||||||| || ||||| |
|
|
| T |
4660883 |
tagctacccatttgtgatccaacaatatgttggtgctctttacgtcgcggtgtattattttgtgtttcacctcagcatgaagataatgcaaccctcttgc |
4660982 |
T |
|
| Q |
215 |
tg |
216 |
Q |
| |
|
|| |
|
|
| T |
4660983 |
tg |
4660984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 4635890 - 4635990
Alignment:
| Q |
69 |
gatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgta |
168 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || ||||||||||||||||| | |||||| |||||||||||||| || || ||||| |||||||| |||| |
|
|
| T |
4635890 |
gatatacctgtcggtcccacctttgataacccaaaatcagaaaccttagctatccatttctcatccaacaatatgttggtgctctttacgtcacgatgta |
4635989 |
T |
|
| Q |
169 |
t |
169 |
Q |
| |
|
| |
|
|
| T |
4635990 |
t |
4635990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 4671646 - 4671786
Alignment:
| Q |
42 |
ttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaata |
141 |
Q |
| |
|
|||||||| |||||||| || || ||| |||||| || |||||||| || ||||| ||||| || ||||||||||| | |||||| ||||||||||||| |
|
|
| T |
4671646 |
ttcaccattgtgctgacgtgggtagttgttatccccgtgggtcccaccttggataacccgaagtcggaaaccttagctatccatttctcatccaacaata |
4671745 |
T |
|
| Q |
142 |
tatttgtactcttaacgtcacggtgtatgatattatgcttc |
182 |
Q |
| |
|
| || || ||||| |||||||| ||||| || || |||||| |
|
|
| T |
4671746 |
tgttggtgctcttcacgtcacgatgtattattttgtgcttc |
4671786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 18926878 - 18926749
Alignment:
| Q |
13 |
actctggatccaaatatcctatactacccttcaccatagtgctgacatgagtcattgatatccctgttggtcccacttttgataaaccgaaatcagaaac |
112 |
Q |
| |
|
|||| ||||| ||||| || | ||| ||||||||||| ||||||||||| || |||||||||| ||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
18926878 |
actcaggatctaaatacccaagactccccttcaccattgtgctgacatgggtagttgatatccccgttggtcccaccttggataacccgaagtcggaaac |
18926779 |
T |
|
| Q |
113 |
cttagccacccatttttcatccaacaatat |
142 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |
|
|
| T |
18926778 |
cttagccacccatttctcatccaataatat |
18926749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 45191576 - 45191491
Alignment:
| Q |
88 |
cttttgataaaccgaaatcagaaaccttagccacccatttttcatccaacaatatatttgtactcttaacgtcacggtgtatgata |
173 |
Q |
| |
|
|||| |||||||| |||||||||||||| || || | || |||||||| | ||||||||| |||| |||||||||||||||||| |
|
|
| T |
45191576 |
ctttagataaaccaaaatcagaaaccttggcaacataattctcatccaagagtatatttgttgtcttcacgtcacggtgtatgata |
45191491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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