View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7409_high_1 (Length: 727)

Name: NF7409_high_1
Description: NF7409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7409_high_1
NF7409_high_1
[»] chr4 (6 HSPs)
chr4 (16-717)||(28787959-28788653)
chr4 (618-717)||(24856236-24856335)
chr4 (618-713)||(24853349-24853444)
chr4 (582-717)||(51246621-51246749)
chr4 (618-706)||(28787018-28787106)
chr4 (582-717)||(17525460-17525590)
[»] scaffold0406 (1 HSPs)
scaffold0406 (618-717)||(6279-6378)
[»] chr7 (1 HSPs)
chr7 (618-717)||(22622375-22622474)
[»] chr5 (5 HSPs)
chr5 (637-717)||(5046447-5046527)
chr5 (637-717)||(5047218-5047298)
chr5 (637-717)||(5047989-5048069)
chr5 (618-675)||(5664821-5664877)
chr5 (649-709)||(5663780-5663840)
[»] chr8 (1 HSPs)
chr8 (618-708)||(1275201-1275291)
[»] chr3 (3 HSPs)
chr3 (637-717)||(12738190-12738270)
chr3 (637-717)||(12739341-12739421)
chr3 (672-717)||(15023058-15023103)
[»] chr2 (2 HSPs)
chr2 (582-716)||(20978804-20978940)
chr2 (622-710)||(33798848-33798936)
[»] chr1 (3 HSPs)
chr1 (618-717)||(22055466-22055564)
chr1 (616-717)||(29371902-29372004)
chr1 (644-717)||(22056567-22056639)
[»] scaffold0272 (1 HSPs)
scaffold0272 (618-657)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 16 - 717
Target Start/End: Complemental strand, 28788653 - 28787959
Alignment:
Q  16 tcagatgatgcacatgttggctcacctaaaaattggtgttcttctagcttaagtcttaatcaaataattataatttgtgtgcttaatcaacatgttataa 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28788653 tcagatgatgcacatgttagctcacctaaaaattggtgttcttctagcttaagtcttaatcaaataattataatttgtgtgcttaatcaacatgttatca 28788554  T
Q  116 aatctcattatggaatcatgttattattcaaggaagttattatgacaagattgatacaactaaaaaacgtgagatgacattgacccactacttctgattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28788553 aatctcattatggaatcatgttattattcaaggaagttattatgacaagattgatacaactaaaaaatgcgagatgacattgacccactacttctgattt 28788454  T
Q  216 ctgcacgtaaaatacaatcacttaataataatgaaatacttaggagtttgcttcaacttaggatgacacacgatgatgattgagtaataagattgaaatg 315  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788453 ctgcacgtaaa---caatcacttaataataatgaaatacttaggagtttgcttcaacttaggatgacacacgatgatgattgagtaataagattgaaatg 28788357  T
Q  316 aaatttttcacttaaatttcaaagtagcagtacaatttaaggtatacaatatgtcaatatctatctctggtaacaaccagttttatggaaagcagcaagt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  28788356 aaatttttcacttaaatttcaaagtagcagtacaatttaaggtatacaatatgttaatatctatctctggtaacaacgagttttatggaaagcaacaagt 28788257  T
Q  416 acatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggnnnnnnnntaaaatatatatagcctagggagctgtagtggtggagagg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||||||||    
T  28788256 acatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggaaaaa----aatatatatatagcctagggagctgtagtggtggagagg 28788161  T
Q  516 atagcttagggagctgtagtggtggagagaatagtagtaaggataagagtacacacattagaaattaggagagaatatcatatggtgaagccttcaatat 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28788160 atagcttagggagctgtagtggtggagagaatagtagtaaggataagaggacacacattagaaattaggagagaatatcatgtggtgaagccttcaatat 28788061  T
Q  616 taaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatct 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28788060 taaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatct 28787961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 618 - 717
Target Start/End: Complemental strand, 24856335 - 24856236
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctag 24856236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 618 - 713
Target Start/End: Complemental strand, 24853444 - 24853349
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataat 713  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| |||||||||||||||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataat 24853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 582 - 717
Target Start/End: Complemental strand, 51246749 - 51246621
Alignment:
Q  582 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 681  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  682 gtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||| ||| | ||||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatctag 51246621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 618 - 706
Target Start/End: Complemental strand, 28787106 - 28787018
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaacta 706  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 582 - 717
Target Start/End: Original strand, 17525460 - 17525590
Alignment:
Q  582 aggagagaatatcatatggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 679  Q
    |||||||||||| |||||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  680 aggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    | | | ||| | ||||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatctag 17525590  T

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Target: scaffold0406 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 618 - 717
Target Start/End: Complemental strand, 6378 - 6279
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctag 6279  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 618 - 717
Target Start/End: Original strand, 22622375 - 22622474
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| |||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctag 22622474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 5046527 - 5046447
Alignment:
Q  637 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| ||||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctag 5046447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 5047298 - 5047218
Alignment:
Q  637 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| ||||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctag 5047218  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 5048069 - 5047989
Alignment:
Q  637 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || ||||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctag 5047989  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 675
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 675  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 709
Target Start/End: Original strand, 5663780 - 5663840
Alignment:
Q  649 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaa 709  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| ||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaa 5663840  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 618 - 708
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 708  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 12738270 - 12738190
Alignment:
Q  637 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| ||||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctag 12738190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 12739421 - 12739341
Alignment:
Q  637 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| ||||||||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctag 12739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 717
Target Start/End: Complemental strand, 15023103 - 15023058
Alignment:
Q  672 ctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctag 15023058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 716
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  582 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 673  Q
    |||||||||||| |||||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  674 atttataggt-gtttgaaaatgtttctagaactagaataatcta 716  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 710
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  622 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 710  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 618 - 717
Target Start/End: Original strand, 22055466 - 22055564
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| ||||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatctag 22055564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 717
Target Start/End: Complemental strand, 29372004 - 29371902
Alignment:
Q  616 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 714  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  715 tag 717  Q
    |||    
T  29371904 tag 29371902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 717
Target Start/End: Original strand, 22056567 - 22056639
Alignment:
Q  644 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 717  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || |||||||||||||||||||||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatctag 22056639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 657
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  618 aatattattgacattgcatcttaaaggcttgaatacaatt 657  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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