View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7409_low_2 (Length: 567)
Name: NF7409_low_2
Description: NF7409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7409_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 305 - 561
Target Start/End: Complemental strand, 3177455 - 3177199
Alignment:
| Q |
305 |
tttgcaagtgaagcaaaatacatacctgtcatgtctaaaattatgcatttcaatgcacttccgttgagtgctaccacgcgttcttcctcttctcgaaccc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3177455 |
tttgcaagtgaagcaaaatacatacctgtcatgtctaaaattatgcacttcaatgcacttccgttgagtgctaccacgcgttcttcctcttctcgaaccc |
3177356 |
T |
|
| Q |
405 |
atctcagtatcctaaagaaagagaaacactcnnnnnnntgccttgaactaatctttgaaatgtacaaaacttgacaagaatacatattgccttataaatg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3177355 |
atctcagtatcctaaagaaagagaaacactcaaaaaaatgccttgaactaatctttgaaatgtacaaaacttgacaagaatacatattgccttataaatg |
3177256 |
T |
|
| Q |
505 |
tggaccagatacatatacttttttgtttatacttaagtcgagagggagtattatcta |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3177255 |
tggaccagatacatatacttttttgtttatacttaagtcgagagggagtattatcta |
3177199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 3177743 - 3177520
Alignment:
| Q |
17 |
gtttttagcttatttccataagttctgcttatgttacaagtacttaattaagctatttatccagattatatcttcttatacgtgttacaatgagtatata |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3177743 |
gtttttagcttatttccataagttatgcttatgttacaagtacttaattaagctatttatccagattatatctgcttatacgtgttacaatgagtatata |
3177644 |
T |
|
| Q |
117 |
ctagtgttgcaacttgcgcgatgcacgagcaggtatatatttacctgaagtgatttttgttccagtctccttctaagttcgcataatgtatcgataccac |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3177643 |
ctagtgttgcaacttgctcgatgcacgagcaggtatatatttacctgaagtgatttttgttccagtctccttctaagttcgcataatgtatcgataccac |
3177544 |
T |
|
| Q |
217 |
ttgtgtctatgccagtcacggctg |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3177543 |
ttgtgtctatgccagtcacggctg |
3177520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University