View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7409_low_4 (Length: 410)
Name: NF7409_low_4
Description: NF7409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7409_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 49351808 - 49352183
Alignment:
| Q |
13 |
aatatcattctagaagttttaaagtattttgtattttttattaaaaattaaggtgagttggatctccaggcacaccaaggcagggtcaggaaaaggctca |
112 |
Q |
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| T |
49351808 |
aatatcattctagaagttttaaagtattttgtattttttattaaaaattaaggtgagttggatctccaggcacaccaaggcagggtcaggaaaaggctca |
49351907 |
T |
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| Q |
113 |
aggttgtgcggtacaaaggtatttacatattacttaccaacgtagccctcatatcaacaacaggagaagtttaaagtattctaataaccctaagcaagcc |
212 |
Q |
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| T |
49351908 |
aggttgtgcggtacaaaggtatttacatattactcaccaacgtagccctcatatcgacaacaggagaagtttaaagtattctaataaccctaagcaaatc |
49352007 |
T |
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| Q |
213 |
tataaggatatttattacttgttcacttgtgctcaggcaaagcttttgactgttatgtacaacaaatttgaagtggaataggctgtcaagaattcaattc |
312 |
Q |
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| T |
49352008 |
tataagga----tattacttgttcacttgtgcccaggcaaagcttttgactgttacgtacaacaaatttgaagtggaataggctgtcaagaattcaattc |
49352103 |
T |
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| Q |
313 |
aatatgagaaataaaacatcaacttcaactatttgtatttattcattttttggttaagacctttaagcttttgggagtac |
392 |
Q |
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| T |
49352104 |
aatatgagaaataaaacatcaacttcaactatttgtatttattcattttttggttaagacctttaagcttttgggagtac |
49352183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 49352317 - 49352372
Alignment:
| Q |
336 |
ttcaactatttgtatttattcattttttggttaagacctttaagcttttgggagtac |
392 |
Q |
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| T |
49352317 |
ttcaattatttgtatttattcatttt-tggttaaaacctttaagcttttaggagtac |
49352372 |
T |
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